miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26140 3' -49.4 NC_005342.2 + 44187 0.66 0.953808
Target:  5'- gAUACCGAgGGugcgaaguggaugAAGGAGAUCGCCg-- -3'
miRNA:   3'- gUAUGGCUgCU-------------UUUCUUUGGCGGgcu -5'
26140 3' -49.4 NC_005342.2 + 4217 0.66 0.952914
Target:  5'- --cAUCGGCGuGAGGAugccgcgcacguucGugCGCCCGGu -3'
miRNA:   3'- guaUGGCUGCuUUUCU--------------UugGCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 2143 0.66 0.949694
Target:  5'- aCGUAUCGACccacAGGAAuUUGCCCGAc -3'
miRNA:   3'- -GUAUGGCUGcuu-UUCUUuGGCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 24927 0.66 0.949694
Target:  5'- uCGUGCCcuGCccGGAGAAGCCGCgCCGc -3'
miRNA:   3'- -GUAUGGc-UGcuUUUCUUUGGCG-GGCu -5'
26140 3' -49.4 NC_005342.2 + 30704 0.66 0.949694
Target:  5'- uCGUugCGAUGAAGGcGAgcgucGACgCGCUCGAc -3'
miRNA:   3'- -GUAugGCUGCUUUU-CU-----UUG-GCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 22352 0.66 0.949694
Target:  5'- --aGCCGACGAAAccugcGCCGCacgcgCCGAg -3'
miRNA:   3'- guaUGGCUGCUUUucuu-UGGCG-----GGCU- -5'
26140 3' -49.4 NC_005342.2 + 26172 0.66 0.949222
Target:  5'- -uUGCgGGCGGcuaccccGAAGucGCCuGCCCGAa -3'
miRNA:   3'- guAUGgCUGCU-------UUUCuuUGG-CGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 10845 0.66 0.944845
Target:  5'- --cGCCGcGCGGGAAGAAcGCCGgCgCGAc -3'
miRNA:   3'- guaUGGC-UGCUUUUCUU-UGGCgG-GCU- -5'
26140 3' -49.4 NC_005342.2 + 40632 0.66 0.944845
Target:  5'- --cGCCGGCGAccAGAAGgCGCgCGc -3'
miRNA:   3'- guaUGGCUGCUuuUCUUUgGCGgGCu -5'
26140 3' -49.4 NC_005342.2 + 9419 0.66 0.944845
Target:  5'- --cGCCGAgGAcaacGAGGAAGaagGCCCGAc -3'
miRNA:   3'- guaUGGCUgCU----UUUCUUUgg-CGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 42414 0.66 0.944845
Target:  5'- --gGCCGACGAGcGGgcGgCGUUCGAu -3'
miRNA:   3'- guaUGGCUGCUUuUCuuUgGCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 42851 0.66 0.944845
Target:  5'- --gGCCGACGGAAGuugucGGGAUCGUguCCGGg -3'
miRNA:   3'- guaUGGCUGCUUUU-----CUUUGGCG--GGCU- -5'
26140 3' -49.4 NC_005342.2 + 14448 0.66 0.939699
Target:  5'- --cGCCGACGAacacGAAGucggaCGCCUGGc -3'
miRNA:   3'- guaUGGCUGCU----UUUCuuug-GCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 28442 0.66 0.937557
Target:  5'- gCAUGCCGuagaaacgcagguCGGccAGcAACUGCCCGAg -3'
miRNA:   3'- -GUAUGGCu------------GCUuuUCuUUGGCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 33076 0.67 0.934254
Target:  5'- --cGCCGuCGu--GGAAcgccuGCUGCCCGAu -3'
miRNA:   3'- guaUGGCuGCuuuUCUU-----UGGCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 18703 0.67 0.934254
Target:  5'- uCGUACCagucggGACGcuuuacagGAAAGGGuuGCCGCCCGc -3'
miRNA:   3'- -GUAUGG------CUGC--------UUUUCUU--UGGCGGGCu -5'
26140 3' -49.4 NC_005342.2 + 12640 0.67 0.934254
Target:  5'- --gAUCGACGGGuc--GACCGCgCCGAa -3'
miRNA:   3'- guaUGGCUGCUUuucuUUGGCG-GGCU- -5'
26140 3' -49.4 NC_005342.2 + 33034 0.67 0.928508
Target:  5'- uCAU-CCGACGAAcgcauaauguGGAACCGUCCu- -3'
miRNA:   3'- -GUAuGGCUGCUUuu--------CUUUGGCGGGcu -5'
26140 3' -49.4 NC_005342.2 + 8973 0.67 0.928508
Target:  5'- --cGCCGGCGcGAAcGAAGCCGCgUCGc -3'
miRNA:   3'- guaUGGCUGCuUUU-CUUUGGCG-GGCu -5'
26140 3' -49.4 NC_005342.2 + 34144 0.67 0.928508
Target:  5'- gCGUAUUuuGCGAAGccauGAGGCCGCCCGc -3'
miRNA:   3'- -GUAUGGc-UGCUUUu---CUUUGGCGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.