miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26140 3' -49.4 NC_005342.2 + 7187 1.1 0.003375
Target:  5'- gCAUACCGACGAAAAGAAACCGCCCGAa -3'
miRNA:   3'- -GUAUGGCUGCUUUUCUUUGGCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 8676 0.73 0.620932
Target:  5'- aCGUGCCGACcgu--GAcGCCGCUCGAg -3'
miRNA:   3'- -GUAUGGCUGcuuuuCUuUGGCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 30999 0.73 0.632432
Target:  5'- cCAUGCCGGCGAGAcc-GGCCGCaCCu- -3'
miRNA:   3'- -GUAUGGCUGCUUUucuUUGGCG-GGcu -5'
26140 3' -49.4 NC_005342.2 + 22055 0.73 0.643932
Target:  5'- --cGCCGACGcAAAGAAAaCgGCCCGc -3'
miRNA:   3'- guaUGGCUGCuUUUCUUU-GgCGGGCu -5'
26140 3' -49.4 NC_005342.2 + 26785 0.73 0.651976
Target:  5'- -cUGCCGACGAGuAGGcgcgcuucguugccGACgGCCCGGc -3'
miRNA:   3'- guAUGGCUGCUUuUCU--------------UUGgCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 29107 0.73 0.66001
Target:  5'- -uUGCCGGCGAAGcAGAcggcguagcacuucuGGCCGUCCGu -3'
miRNA:   3'- guAUGGCUGCUUU-UCU---------------UUGGCGGGCu -5'
26140 3' -49.4 NC_005342.2 + 41485 0.71 0.723426
Target:  5'- cCGUGCCG-CccGAAGuuGCCGCCCGc -3'
miRNA:   3'- -GUAUGGCuGcuUUUCuuUGGCGGGCu -5'
26140 3' -49.4 NC_005342.2 + 27835 0.71 0.723426
Target:  5'- aCAUGCUGACGAAc---GugCGCCUGAc -3'
miRNA:   3'- -GUAUGGCUGCUUuucuUugGCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 47932 0.7 0.777484
Target:  5'- cCAUGCCGGCGc--GGugcGCgCGCCCGGu -3'
miRNA:   3'- -GUAUGGCUGCuuuUCuu-UG-GCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 11267 0.7 0.777484
Target:  5'- --cGCCGGC---AAGGAGCCgcGCCCGAa -3'
miRNA:   3'- guaUGGCUGcuuUUCUUUGG--CGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 44394 0.7 0.787855
Target:  5'- gGUGUCGACGuc--GAGGCCGCCCa- -3'
miRNA:   3'- gUAUGGCUGCuuuuCUUUGGCGGGcu -5'
26140 3' -49.4 NC_005342.2 + 22983 0.7 0.791954
Target:  5'- gGUACCGGuCGccGAGAGcaggaagcggaacacGCCGCCCGc -3'
miRNA:   3'- gUAUGGCU-GCuuUUCUU---------------UGGCGGGCu -5'
26140 3' -49.4 NC_005342.2 + 2681 0.69 0.836811
Target:  5'- --cGCCGGCGAGcgcGAuGAACCGCgCGGu -3'
miRNA:   3'- guaUGGCUGCUU---UUcUUUGGCGgGCU- -5'
26140 3' -49.4 NC_005342.2 + 38447 0.69 0.836811
Target:  5'- -cUGCuCGACGAAGuacGAcuugcccguGCCGCCCGGg -3'
miRNA:   3'- guAUG-GCUGCUUUu--CUu--------UGGCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 5209 0.69 0.845941
Target:  5'- gGUAuUCGGCGAu--GAAGCCGgCCGGg -3'
miRNA:   3'- gUAU-GGCUGCUuuuCUUUGGCgGGCU- -5'
26140 3' -49.4 NC_005342.2 + 20335 0.69 0.845941
Target:  5'- cCGUGCCGACGGGu----ACCGCgaCCGGc -3'
miRNA:   3'- -GUAUGGCUGCUUuucuuUGGCG--GGCU- -5'
26140 3' -49.4 NC_005342.2 + 18012 0.69 0.845941
Target:  5'- --aGCCGACGAA-----GCCGgCCGAg -3'
miRNA:   3'- guaUGGCUGCUUuucuuUGGCgGGCU- -5'
26140 3' -49.4 NC_005342.2 + 11100 0.69 0.863457
Target:  5'- --cGCCGGCGGucGAGAAuUCGaCCCGGg -3'
miRNA:   3'- guaUGGCUGCUu-UUCUUuGGC-GGGCU- -5'
26140 3' -49.4 NC_005342.2 + 24255 0.69 0.863457
Target:  5'- uGUGCCGcccguCGAAAAGAAcccgaaauuGUCGCCCGGc -3'
miRNA:   3'- gUAUGGCu----GCUUUUCUU---------UGGCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 37174 0.68 0.871824
Target:  5'- --cGCCGACGuaggacgauGAGGAcGGCCGCgCGAc -3'
miRNA:   3'- guaUGGCUGCu--------UUUCU-UUGGCGgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.