miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26140 3' -49.4 NC_005342.2 + 7187 1.1 0.003375
Target:  5'- gCAUACCGACGAAAAGAAACCGCCCGAa -3'
miRNA:   3'- -GUAUGGCUGCUUUUCUUUGGCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 8409 0.67 0.92246
Target:  5'- --cGCCGACGuu--GAu-CUGCCCGGc -3'
miRNA:   3'- guaUGGCUGCuuuuCUuuGGCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 22881 0.67 0.92246
Target:  5'- uCGUACUggcgcucguGACGAGcAGAAgcgcggugcuGCCGCUCGAg -3'
miRNA:   3'- -GUAUGG---------CUGCUUuUCUU----------UGGCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 44187 0.66 0.953808
Target:  5'- gAUACCGAgGGugcgaaguggaugAAGGAGAUCGCCg-- -3'
miRNA:   3'- gUAUGGCUgCU-------------UUUCUUUGGCGGgcu -5'
26140 3' -49.4 NC_005342.2 + 29107 0.73 0.66001
Target:  5'- -uUGCCGGCGAAGcAGAcggcguagcacuucuGGCCGUCCGu -3'
miRNA:   3'- guAUGGCUGCUUU-UCU---------------UUGGCGGGCu -5'
26140 3' -49.4 NC_005342.2 + 44394 0.7 0.787855
Target:  5'- gGUGUCGACGuc--GAGGCCGCCCa- -3'
miRNA:   3'- gUAUGGCUGCuuuuCUUUGGCGGGcu -5'
26140 3' -49.4 NC_005342.2 + 18012 0.69 0.845941
Target:  5'- --aGCCGACGAA-----GCCGgCCGAg -3'
miRNA:   3'- guaUGGCUGCUUuucuuUGGCgGGCU- -5'
26140 3' -49.4 NC_005342.2 + 5209 0.69 0.845941
Target:  5'- gGUAuUCGGCGAu--GAAGCCGgCCGGg -3'
miRNA:   3'- gUAU-GGCUGCUuuuCUUUGGCgGGCU- -5'
26140 3' -49.4 NC_005342.2 + 24319 0.68 0.87992
Target:  5'- --gACCGACc--GAGAAugCGCCCc- -3'
miRNA:   3'- guaUGGCUGcuuUUCUUugGCGGGcu -5'
26140 3' -49.4 NC_005342.2 + 38034 0.67 0.92246
Target:  5'- --gACCGGCGAaaugcgccucGAGGGuguGCCGaCCGAa -3'
miRNA:   3'- guaUGGCUGCU----------UUUCUu--UGGCgGGCU- -5'
26140 3' -49.4 NC_005342.2 + 47834 0.68 0.89527
Target:  5'- gGUGCCGACGAGgcGcAGGCgGCaaCCGGg -3'
miRNA:   3'- gUAUGGCUGCUUuuC-UUUGgCG--GGCU- -5'
26140 3' -49.4 NC_005342.2 + 24255 0.69 0.863457
Target:  5'- uGUGCCGcccguCGAAAAGAAcccgaaauuGUCGCCCGGc -3'
miRNA:   3'- gUAUGGCu----GCUUUUCUU---------UGGCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 8676 0.73 0.620932
Target:  5'- aCGUGCCGACcgu--GAcGCCGCUCGAg -3'
miRNA:   3'- -GUAUGGCUGcuuuuCUuUGGCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 22436 0.67 0.90946
Target:  5'- --cGCCGAgGAAcgcgauGGcGACCuGCCCGAg -3'
miRNA:   3'- guaUGGCUgCUUu-----UCuUUGG-CGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 30999 0.73 0.632432
Target:  5'- cCAUGCCGGCGAGAcc-GGCCGCaCCu- -3'
miRNA:   3'- -GUAUGGCUGCUUUucuUUGGCG-GGcu -5'
26140 3' -49.4 NC_005342.2 + 20335 0.69 0.845941
Target:  5'- cCGUGCCGACGGGu----ACCGCgaCCGGc -3'
miRNA:   3'- -GUAUGGCUGCUUuucuuUGGCG--GGCU- -5'
26140 3' -49.4 NC_005342.2 + 38569 0.67 0.91611
Target:  5'- aCGUACCgGGCGccauacGAAcGCCGCCCGu -3'
miRNA:   3'- -GUAUGG-CUGCuuuu--CUU-UGGCGGGCu -5'
26140 3' -49.4 NC_005342.2 + 14950 0.67 0.92246
Target:  5'- gAUACCGACGucgaucGAGAaccgguuagcgGACCGCCg-- -3'
miRNA:   3'- gUAUGGCUGCuu----UUCU-----------UUGGCGGgcu -5'
26140 3' -49.4 NC_005342.2 + 26785 0.73 0.651976
Target:  5'- -cUGCCGACGAGuAGGcgcgcuucguugccGACgGCCCGGc -3'
miRNA:   3'- guAUGGCUGCUUuUCU--------------UUGgCGGGCU- -5'
26140 3' -49.4 NC_005342.2 + 22983 0.7 0.791954
Target:  5'- gGUACCGGuCGccGAGAGcaggaagcggaacacGCCGCCCGc -3'
miRNA:   3'- gUAUGGCU-GCuuUUCUU---------------UGGCGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.