miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26140 5' -54.4 NC_005342.2 + 32156 0.65 0.761589
Target:  5'- gUCUCGUacucGGCGcccuucaGCGCCgCGACGAg---- -3'
miRNA:   3'- -AGAGCG----CCGU-------UGCGG-GCUGCUaaucu -5'
26140 5' -54.4 NC_005342.2 + 4770 0.66 0.752232
Target:  5'- gCUCGCGggcGCGACGuauCCCGAUGAg---- -3'
miRNA:   3'- aGAGCGC---CGUUGC---GGGCUGCUaaucu -5'
26140 5' -54.4 NC_005342.2 + 2835 0.66 0.752232
Target:  5'- -gUCGCGGCGuuugcgaacgACGUCgCGGCGGcgAGGc -3'
miRNA:   3'- agAGCGCCGU----------UGCGG-GCUGCUaaUCU- -5'
26140 5' -54.4 NC_005342.2 + 46664 0.66 0.745937
Target:  5'- gCUCGCGGCAcucgguuucuuucgaGCGCaCGGCGucgauGAg -3'
miRNA:   3'- aGAGCGCCGU---------------UGCGgGCUGCuaau-CU- -5'
26140 5' -54.4 NC_005342.2 + 30013 0.66 0.741717
Target:  5'- -aUCGCGcGCGGCGCgUCGAuCGAUcAGGc -3'
miRNA:   3'- agAGCGC-CGUUGCG-GGCU-GCUAaUCU- -5'
26140 5' -54.4 NC_005342.2 + 27119 0.66 0.731089
Target:  5'- ----aCGGCAACGCCCGuCGAg---- -3'
miRNA:   3'- agagcGCCGUUGCGGGCuGCUaaucu -5'
26140 5' -54.4 NC_005342.2 + 17405 0.66 0.731089
Target:  5'- --gCGCGGCcacGACGCgCUGACGAUc--- -3'
miRNA:   3'- agaGCGCCG---UUGCG-GGCUGCUAaucu -5'
26140 5' -54.4 NC_005342.2 + 8964 0.66 0.72036
Target:  5'- --gCGCGGCGGCGaCCGACGc----- -3'
miRNA:   3'- agaGCGCCGUUGCgGGCUGCuaaucu -5'
26140 5' -54.4 NC_005342.2 + 27420 0.66 0.72036
Target:  5'- cCUgCGCGGCGACGgCUGuCGAccAGGc -3'
miRNA:   3'- aGA-GCGCCGUUGCgGGCuGCUaaUCU- -5'
26140 5' -54.4 NC_005342.2 + 39048 0.66 0.709541
Target:  5'- -aUCGCGGCGcguGCGCCUGcCGGc---- -3'
miRNA:   3'- agAGCGCCGU---UGCGGGCuGCUaaucu -5'
26140 5' -54.4 NC_005342.2 + 17267 0.67 0.665606
Target:  5'- ---aGCGGCAGugguCGCCCgcGACGAUguagGGAu -3'
miRNA:   3'- agagCGCCGUU----GCGGG--CUGCUAa---UCU- -5'
26140 5' -54.4 NC_005342.2 + 38464 0.67 0.665606
Target:  5'- uUCagCGCGGCGGCcagcuGCUCGACGAa---- -3'
miRNA:   3'- -AGa-GCGCCGUUG-----CGGGCUGCUaaucu -5'
26140 5' -54.4 NC_005342.2 + 46861 0.67 0.654514
Target:  5'- -gUCGCGGguGCGCuucucguagCCGGCGAauucgAGAa -3'
miRNA:   3'- agAGCGCCguUGCG---------GGCUGCUaa---UCU- -5'
26140 5' -54.4 NC_005342.2 + 20009 0.67 0.654514
Target:  5'- aCUCGaCGGCGGCucgccGCCCGGCGc----- -3'
miRNA:   3'- aGAGC-GCCGUUG-----CGGGCUGCuaaucu -5'
26140 5' -54.4 NC_005342.2 + 3880 0.68 0.643401
Target:  5'- -gUCGUGGUAGCGCCaGGCGGc---- -3'
miRNA:   3'- agAGCGCCGUUGCGGgCUGCUaaucu -5'
26140 5' -54.4 NC_005342.2 + 33176 0.68 0.610041
Target:  5'- ---aGCGGC-GCGCCgGGCGAUccAGAg -3'
miRNA:   3'- agagCGCCGuUGCGGgCUGCUAa-UCU- -5'
26140 5' -54.4 NC_005342.2 + 20573 0.68 0.587881
Target:  5'- --gCGCGGCGGCGgCCGgcaGCGGUUGc- -3'
miRNA:   3'- agaGCGCCGUUGCgGGC---UGCUAAUcu -5'
26140 5' -54.4 NC_005342.2 + 38578 0.69 0.576854
Target:  5'- gUCUCGCGGCGccccAUGCCgGACa------ -3'
miRNA:   3'- -AGAGCGCCGU----UGCGGgCUGcuaaucu -5'
26140 5' -54.4 NC_005342.2 + 13509 0.69 0.565873
Target:  5'- gCUCGCGGCGuUGCcgCCGGCGGccAGGc -3'
miRNA:   3'- aGAGCGCCGUuGCG--GGCUGCUaaUCU- -5'
26140 5' -54.4 NC_005342.2 + 19207 0.69 0.565873
Target:  5'- uUCUCGCGGCGuuccgcacgGCGCUCGAgcaauaCGGgcUGGAc -3'
miRNA:   3'- -AGAGCGCCGU---------UGCGGGCU------GCUa-AUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.