miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26140 5' -54.4 NC_005342.2 + 44527 0.7 0.501403
Target:  5'- --aCGCcGCGACGCUCGGCGAggacaUGGAc -3'
miRNA:   3'- agaGCGcCGUUGCGGGCUGCUa----AUCU- -5'
26140 5' -54.4 NC_005342.2 + 37034 0.7 0.47038
Target:  5'- -gUCGCGGCggUGCUCGACGcgcucGAa -3'
miRNA:   3'- agAGCGCCGuuGCGGGCUGCuaau-CU- -5'
26140 5' -54.4 NC_005342.2 + 4954 0.72 0.374826
Target:  5'- cCUUGCGGCAGCGCauauucgaaCGACGAc---- -3'
miRNA:   3'- aGAGCGCCGUUGCGg--------GCUGCUaaucu -5'
26140 5' -54.4 NC_005342.2 + 30844 0.73 0.324148
Target:  5'- gCUCGCGcGCGA-GCCCGGCGAa---- -3'
miRNA:   3'- aGAGCGC-CGUUgCGGGCUGCUaaucu -5'
26140 5' -54.4 NC_005342.2 + 7221 1.09 0.001076
Target:  5'- uUCUCGCGGCAACGCCCGACGAUUAGAc -3'
miRNA:   3'- -AGAGCGCCGUUGCGGGCUGCUAAUCU- -5'
26140 5' -54.4 NC_005342.2 + 39740 0.69 0.565873
Target:  5'- aCUCGC-GCGGCGCCaCGGCGc--GGAc -3'
miRNA:   3'- aGAGCGcCGUUGCGG-GCUGCuaaUCU- -5'
26140 5' -54.4 NC_005342.2 + 32156 0.65 0.761589
Target:  5'- gUCUCGUacucGGCGcccuucaGCGCCgCGACGAg---- -3'
miRNA:   3'- -AGAGCG----CCGU-------UGCGG-GCUGCUaaucu -5'
26140 5' -54.4 NC_005342.2 + 27420 0.66 0.72036
Target:  5'- cCUgCGCGGCGACGgCUGuCGAccAGGc -3'
miRNA:   3'- aGA-GCGCCGUUGCgGGCuGCUaaUCU- -5'
26140 5' -54.4 NC_005342.2 + 8964 0.66 0.72036
Target:  5'- --gCGCGGCGGCGaCCGACGc----- -3'
miRNA:   3'- agaGCGCCGUUGCgGGCUGCuaaucu -5'
26140 5' -54.4 NC_005342.2 + 33176 0.68 0.610041
Target:  5'- ---aGCGGC-GCGCCgGGCGAUccAGAg -3'
miRNA:   3'- agagCGCCGuUGCGGgCUGCUAa-UCU- -5'
26140 5' -54.4 NC_005342.2 + 37396 0.7 0.522575
Target:  5'- gCUCGuCGGCcg-GCCCGGCGcgUGGc -3'
miRNA:   3'- aGAGC-GCCGuugCGGGCUGCuaAUCu -5'
26140 5' -54.4 NC_005342.2 + 17405 0.66 0.731089
Target:  5'- --gCGCGGCcacGACGCgCUGACGAUc--- -3'
miRNA:   3'- agaGCGCCG---UUGCG-GGCUGCUAaucu -5'
26140 5' -54.4 NC_005342.2 + 13509 0.69 0.565873
Target:  5'- gCUCGCGGCGuUGCcgCCGGCGGccAGGc -3'
miRNA:   3'- aGAGCGCCGUuGCG--GGCUGCUaaUCU- -5'
26140 5' -54.4 NC_005342.2 + 3880 0.68 0.643401
Target:  5'- -gUCGUGGUAGCGCCaGGCGGc---- -3'
miRNA:   3'- agAGCGCCGUUGCGGgCUGCUaaucu -5'
26140 5' -54.4 NC_005342.2 + 2835 0.66 0.752232
Target:  5'- -gUCGCGGCGuuugcgaacgACGUCgCGGCGGcgAGGc -3'
miRNA:   3'- agAGCGCCGU----------UGCGG-GCUGCUaaUCU- -5'
26140 5' -54.4 NC_005342.2 + 19207 0.69 0.565873
Target:  5'- uUCUCGCGGCGuuccgcacgGCGCUCGAgcaauaCGGgcUGGAc -3'
miRNA:   3'- -AGAGCGCCGU---------UGCGGGCU------GCUa-AUCU- -5'
26140 5' -54.4 NC_005342.2 + 16970 0.7 0.490958
Target:  5'- aCUCGCGGCAuacgccgucgccGCGCUCGACu------ -3'
miRNA:   3'- aGAGCGCCGU------------UGCGGGCUGcuaaucu -5'
26140 5' -54.4 NC_005342.2 + 3045 0.74 0.316214
Target:  5'- -gUCGCGGCgGACGCgCCGGCGAg---- -3'
miRNA:   3'- agAGCGCCG-UUGCG-GGCUGCUaaucu -5'
26140 5' -54.4 NC_005342.2 + 15347 0.7 0.511944
Target:  5'- gCUCGaCGGCaAGCGCCCGGugcUGAUgcuGAc -3'
miRNA:   3'- aGAGC-GCCG-UUGCGGGCU---GCUAau-CU- -5'
26140 5' -54.4 NC_005342.2 + 36101 0.69 0.533291
Target:  5'- --gCGauGCGACGCCCGGCGAc---- -3'
miRNA:   3'- agaGCgcCGUUGCGGGCUGCUaaucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.