miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26142 3' -59.5 NC_005342.2 + 3237 0.66 0.470416
Target:  5'- gGGcCGGCucaccGGCCuCGUGCucacGCAGGAuaCGUCc -3'
miRNA:   3'- -CC-GCCGu----CUGG-GUACG----CGUCCU--GCAG- -5'
26142 3' -59.5 NC_005342.2 + 6451 0.66 0.470416
Target:  5'- -aCGGCAcGACCgCAUGCGCGuGGGauUCu -3'
miRNA:   3'- ccGCCGU-CUGG-GUACGCGU-CCUgcAG- -5'
26142 3' -59.5 NC_005342.2 + 21674 0.66 0.470416
Target:  5'- uGCGGCGGguuGCUCuuugucaaAUGCGgGcGGGCGUCg -3'
miRNA:   3'- cCGCCGUC---UGGG--------UACGCgU-CCUGCAG- -5'
26142 3' -59.5 NC_005342.2 + 40903 0.66 0.470416
Target:  5'- gGGCcGCAacuuuaacGACUCGUGCGCgAGGGCuaccuGUCg -3'
miRNA:   3'- -CCGcCGU--------CUGGGUACGCG-UCCUG-----CAG- -5'
26142 3' -59.5 NC_005342.2 + 3507 0.66 0.464489
Target:  5'- cGGCGuaaagcgggaucaacGCGGugCC--GCGCAGcGCGUCg -3'
miRNA:   3'- -CCGC---------------CGUCugGGuaCGCGUCcUGCAG- -5'
26142 3' -59.5 NC_005342.2 + 7905 0.66 0.450811
Target:  5'- gGGCGaGCGcgagcuggaaauGGCCg--GCGCAGGccGCGUCg -3'
miRNA:   3'- -CCGC-CGU------------CUGGguaCGCGUCC--UGCAG- -5'
26142 3' -59.5 NC_005342.2 + 29120 0.66 0.441177
Target:  5'- cGGCuGGUAcACCCucugGCuGCAGGGCGa- -3'
miRNA:   3'- -CCG-CCGUcUGGGua--CG-CGUCCUGCag -5'
26142 3' -59.5 NC_005342.2 + 35268 0.66 0.441177
Target:  5'- aGGCGGCAcgcucaccGGCCCGUuGaCGguGccGACGUUg -3'
miRNA:   3'- -CCGCCGU--------CUGGGUA-C-GCguC--CUGCAG- -5'
26142 3' -59.5 NC_005342.2 + 40486 0.66 0.431661
Target:  5'- cGC-GCAGACCUGgcCGCAGGcacGCGUCa -3'
miRNA:   3'- cCGcCGUCUGGGUacGCGUCC---UGCAG- -5'
26142 3' -59.5 NC_005342.2 + 23690 0.66 0.429773
Target:  5'- uGGcCGGCGGAaaaCCGagcgauuggcucGCGCGGGuuGCGUCg -3'
miRNA:   3'- -CC-GCCGUCUg--GGUa-----------CGCGUCC--UGCAG- -5'
26142 3' -59.5 NC_005342.2 + 11777 0.66 0.422267
Target:  5'- cGGuCGGCugccGGACauc-GCGCAGGACGcCa -3'
miRNA:   3'- -CC-GCCG----UCUGgguaCGCGUCCUGCaG- -5'
26142 3' -59.5 NC_005342.2 + 2659 0.66 0.422267
Target:  5'- cGCGGUcGGCCUGUcGCGCAauuGGGCGa- -3'
miRNA:   3'- cCGCCGuCUGGGUA-CGCGU---CCUGCag -5'
26142 3' -59.5 NC_005342.2 + 9512 0.66 0.419473
Target:  5'- cGGCGGCGGugcggcGCCCGcacuugGCGCGcaagacggcgaaccGGACGg- -3'
miRNA:   3'- -CCGCCGUC------UGGGUa-----CGCGU--------------CCUGCag -5'
26142 3' -59.5 NC_005342.2 + 9967 0.67 0.412997
Target:  5'- cGCGGC-GACCUgcucGUGUGGGACGgUCa -3'
miRNA:   3'- cCGCCGuCUGGGua--CGCGUCCUGC-AG- -5'
26142 3' -59.5 NC_005342.2 + 22445 0.67 0.366029
Target:  5'- -cUGGCAGACggCCAUccucggcgcgugcgGCGCAGGuuuCGUCg -3'
miRNA:   3'- ccGCCGUCUG--GGUA--------------CGCGUCCu--GCAG- -5'
26142 3' -59.5 NC_005342.2 + 28994 0.68 0.360107
Target:  5'- cGGCuGGaacGACgCCAUGCGCGGGuGCG-Cg -3'
miRNA:   3'- -CCG-CCgu-CUG-GGUACGCGUCC-UGCaG- -5'
26142 3' -59.5 NC_005342.2 + 15960 0.68 0.360107
Target:  5'- uGGCGGCGauGGCaCCGUGgGCGGucgcauCGUCu -3'
miRNA:   3'- -CCGCCGU--CUG-GGUACgCGUCcu----GCAG- -5'
26142 3' -59.5 NC_005342.2 + 4063 0.68 0.360107
Target:  5'- uGGUGGcCGGACUgGUGCGCcuucGAgGUCa -3'
miRNA:   3'- -CCGCC-GUCUGGgUACGCGuc--CUgCAG- -5'
26142 3' -59.5 NC_005342.2 + 3903 0.68 0.351764
Target:  5'- cGGCGGCAGGCCgAccgGCAGGuugGCGcCg -3'
miRNA:   3'- -CCGCCGUCUGGgUacgCGUCC---UGCaG- -5'
26142 3' -59.5 NC_005342.2 + 38774 0.68 0.335493
Target:  5'- cGGaCGGCGaguacgcgcGACUCGUGCGCcGuGCGUCg -3'
miRNA:   3'- -CC-GCCGU---------CUGGGUACGCGuCcUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.