miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26150 5' -58.3 NC_005342.2 + 3969 0.66 0.507135
Target:  5'- uGCC--GGUCGGCcu-GCCG-CCGCUg -3'
miRNA:   3'- -CGGguCCAGCCGuauCGGCuGGUGAa -5'
26150 5' -58.3 NC_005342.2 + 13213 0.66 0.507135
Target:  5'- cGCCC-GGUCGGCGacaugcucaAGCCGACgUAUUc -3'
miRNA:   3'- -CGGGuCCAGCCGUa--------UCGGCUG-GUGAa -5'
26150 5' -58.3 NC_005342.2 + 7808 0.66 0.49674
Target:  5'- gGCUCGuacuuGuUCGGCGUGGCCGGCCuCg- -3'
miRNA:   3'- -CGGGU-----CcAGCCGUAUCGGCUGGuGaa -5'
26150 5' -58.3 NC_005342.2 + 45182 0.66 0.486443
Target:  5'- -gCCAGGUCuGCGgccuuGCCGACCuggcGCUg -3'
miRNA:   3'- cgGGUCCAGcCGUau---CGGCUGG----UGAa -5'
26150 5' -58.3 NC_005342.2 + 2564 0.66 0.480313
Target:  5'- cGUCCAGG-CGGUcgugaaggucgcccaAUugcgcgacaGGCCGACCGCg- -3'
miRNA:   3'- -CGGGUCCaGCCG---------------UA---------UCGGCUGGUGaa -5'
26150 5' -58.3 NC_005342.2 + 38362 0.66 0.480313
Target:  5'- gGCCCGGG-CGGCAcgggcaagUcguacuucgucgagcAGCUGGCCGCc- -3'
miRNA:   3'- -CGGGUCCaGCCGU--------A---------------UCGGCUGGUGaa -5'
26150 5' -58.3 NC_005342.2 + 28848 0.66 0.476248
Target:  5'- aGCgCCAGGUCGGCgcgaucGUGGgCGGCgCAgUg -3'
miRNA:   3'- -CG-GGUCCAGCCG------UAUCgGCUG-GUgAa -5'
26150 5' -58.3 NC_005342.2 + 32465 0.66 0.476248
Target:  5'- cGCgCAGGUCGcuGCc--GCCGGCCAUa- -3'
miRNA:   3'- -CGgGUCCAGC--CGuauCGGCUGGUGaa -5'
26150 5' -58.3 NC_005342.2 + 44681 0.66 0.456183
Target:  5'- cGCgCAcGUCGGC--GGCCGACUGCa- -3'
miRNA:   3'- -CGgGUcCAGCCGuaUCGGCUGGUGaa -5'
26150 5' -58.3 NC_005342.2 + 22277 0.66 0.456183
Target:  5'- gGCCCGucUCGGCAUcgAGCaGGCCGCa- -3'
miRNA:   3'- -CGGGUccAGCCGUA--UCGgCUGGUGaa -5'
26150 5' -58.3 NC_005342.2 + 31866 0.67 0.446323
Target:  5'- aCgCGGcgacuGUCGGCA-GGCCGGCCACg- -3'
miRNA:   3'- cGgGUC-----CAGCCGUaUCGGCUGGUGaa -5'
26150 5' -58.3 NC_005342.2 + 2258 0.67 0.436583
Target:  5'- cGCCgucggCAGGUCGuGCgccGUGGCCGGCaCGCc- -3'
miRNA:   3'- -CGG-----GUCCAGC-CG---UAUCGGCUG-GUGaa -5'
26150 5' -58.3 NC_005342.2 + 44934 0.67 0.426966
Target:  5'- aGCCCGGccacgugcuuGUCGGU---GCCGACCugUc -3'
miRNA:   3'- -CGGGUC----------CAGCCGuauCGGCUGGugAa -5'
26150 5' -58.3 NC_005342.2 + 39492 0.67 0.411844
Target:  5'- uGCCgAGGUCGcuugucgucaguggcGCAggcaGGCCGACCAg-- -3'
miRNA:   3'- -CGGgUCCAGC---------------CGUa---UCGGCUGGUgaa -5'
26150 5' -58.3 NC_005342.2 + 22089 0.67 0.408116
Target:  5'- cGCCCAGGUUGGCGaccgucaAGaCGAgCACg- -3'
miRNA:   3'- -CGGGUCCAGCCGUa------UCgGCUgGUGaa -5'
26150 5' -58.3 NC_005342.2 + 45257 0.68 0.389795
Target:  5'- uGCUCGGG-CGGCAgguggacgccgUAGuuGGCCGCc- -3'
miRNA:   3'- -CGGGUCCaGCCGU-----------AUCggCUGGUGaa -5'
26150 5' -58.3 NC_005342.2 + 3193 0.68 0.389795
Target:  5'- aGCCC-GGUCaGC-UGGCCGACUuCUUc -3'
miRNA:   3'- -CGGGuCCAGcCGuAUCGGCUGGuGAA- -5'
26150 5' -58.3 NC_005342.2 + 26509 0.68 0.363342
Target:  5'- cGgCCAGGUCGGCAc-GCCgcacaauuGACCAUg- -3'
miRNA:   3'- -CgGGUCCAGCCGUauCGG--------CUGGUGaa -5'
26150 5' -58.3 NC_005342.2 + 4405 0.68 0.354805
Target:  5'- gGCCCA-GUCcGCGUuguugucuGCCGGCCACUc -3'
miRNA:   3'- -CGGGUcCAGcCGUAu-------CGGCUGGUGAa -5'
26150 5' -58.3 NC_005342.2 + 18543 0.69 0.32209
Target:  5'- aCCCGGGUgCGGCAgccGGCgCGGCgGCg- -3'
miRNA:   3'- cGGGUCCA-GCCGUa--UCG-GCUGgUGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.