miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26156 3' -52.7 NC_005342.2 + 28679 0.66 0.81065
Target:  5'- gGCCUgcgccgaGCGCGACCGUGCg-GCa -3'
miRNA:   3'- -UGGAacuca--CGCGCUGGUAUGaaCGc -5'
26156 3' -52.7 NC_005342.2 + 8691 0.66 0.790761
Target:  5'- cGCCgcucGAGUcCGCGAUCAU-CUUGCc -3'
miRNA:   3'- -UGGaa--CUCAcGCGCUGGUAuGAACGc -5'
26156 3' -52.7 NC_005342.2 + 37990 0.67 0.759633
Target:  5'- uGCCUguucgacGAGaucgaugcacGCGCGACCGUGCacGCGg -3'
miRNA:   3'- -UGGAa------CUCa---------CGCGCUGGUAUGaaCGC- -5'
26156 3' -52.7 NC_005342.2 + 45890 0.67 0.759633
Target:  5'- aGCCcaGAuGUGgGCGACCAggGCUggGCGc -3'
miRNA:   3'- -UGGaaCU-CACgCGCUGGUa-UGAa-CGC- -5'
26156 3' -52.7 NC_005342.2 + 19629 0.67 0.738162
Target:  5'- cCCUUGuGccGCGcCGACCGUGCgaccgGCGc -3'
miRNA:   3'- uGGAACuCa-CGC-GCUGGUAUGaa---CGC- -5'
26156 3' -52.7 NC_005342.2 + 25193 0.67 0.716234
Target:  5'- gGCCgcGAacGUGCGCGccGCCGUGCUcGCc -3'
miRNA:   3'- -UGGaaCU--CACGCGC--UGGUAUGAaCGc -5'
26156 3' -52.7 NC_005342.2 + 6803 0.68 0.69395
Target:  5'- uACCUcGAGgcGCGCGACCGggGCgccgugGCGc -3'
miRNA:   3'- -UGGAaCUCa-CGCGCUGGUa-UGaa----CGC- -5'
26156 3' -52.7 NC_005342.2 + 11871 0.68 0.682706
Target:  5'- cACCUUGucGU-CGCGGCCcgGCaUGCGc -3'
miRNA:   3'- -UGGAACu-CAcGCGCUGGuaUGaACGC- -5'
26156 3' -52.7 NC_005342.2 + 15998 0.68 0.660076
Target:  5'- gACCUgcUGAaaGUGCGC-ACCGUgACUUGCc -3'
miRNA:   3'- -UGGA--ACU--CACGCGcUGGUA-UGAACGc -5'
26156 3' -52.7 NC_005342.2 + 38990 0.68 0.660076
Target:  5'- gGCCgacGGGaUGCGCgGGCCGUGCUgccggUGCa -3'
miRNA:   3'- -UGGaa-CUC-ACGCG-CUGGUAUGA-----ACGc -5'
26156 3' -52.7 NC_005342.2 + 40651 0.69 0.637334
Target:  5'- uACC--GAGUcGCGCGACCAUcGCcgGCGa -3'
miRNA:   3'- -UGGaaCUCA-CGCGCUGGUA-UGaaCGC- -5'
26156 3' -52.7 NC_005342.2 + 38771 0.69 0.637334
Target:  5'- aGCCggacggcGAGUacGCGCGACuCGUGCgccgUGCGu -3'
miRNA:   3'- -UGGaa-----CUCA--CGCGCUG-GUAUGa---ACGC- -5'
26156 3' -52.7 NC_005342.2 + 2410 0.7 0.591874
Target:  5'- uGCCUUGGuacgGCGCGGCgAacACUUGCGc -3'
miRNA:   3'- -UGGAACUca--CGCGCUGgUa-UGAACGC- -5'
26156 3' -52.7 NC_005342.2 + 46723 0.72 0.440705
Target:  5'- cGCCUUGGcUGCGCG-CgAUGCUUcGCGg -3'
miRNA:   3'- -UGGAACUcACGCGCuGgUAUGAA-CGC- -5'
26156 3' -52.7 NC_005342.2 + 11742 1.08 0.001674
Target:  5'- cACCUUGAGUGCGCGACCAUACUUGCGc -3'
miRNA:   3'- -UGGAACUCACGCGCUGGUAUGAACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.