miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26156 5' -55.4 NC_005342.2 + 6389 0.66 0.683936
Target:  5'- cGGCGCAucGUaaaaucgcGCGGUGCGGUCGUCcucacGGCu -3'
miRNA:   3'- -UCGCGUu-CA--------UGCUGCGCCGGUAG-----UCG- -5'
26156 5' -55.4 NC_005342.2 + 38779 0.66 0.683936
Target:  5'- --gGCGAGUACG-CGCGacucgugcGCCgugcGUCGGCa -3'
miRNA:   3'- ucgCGUUCAUGCuGCGC--------CGG----UAGUCG- -5'
26156 5' -55.4 NC_005342.2 + 19549 0.66 0.683936
Target:  5'- gGGCGCcGGUcgcacgguCGGCGCGGCaCAagGGg -3'
miRNA:   3'- -UCGCGuUCAu-------GCUGCGCCG-GUagUCg -5'
26156 5' -55.4 NC_005342.2 + 27295 0.66 0.683936
Target:  5'- cGGCGaaaccgAUGAUGCGGCCA--GGCu -3'
miRNA:   3'- -UCGCguuca-UGCUGCGCCGGUagUCG- -5'
26156 5' -55.4 NC_005342.2 + 36535 0.66 0.683936
Target:  5'- uGcCGuCGAGUGCG-CGCuacGGCCAUCgccGGCc -3'
miRNA:   3'- uC-GC-GUUCAUGCuGCG---CCGGUAG---UCG- -5'
26156 5' -55.4 NC_005342.2 + 10026 0.66 0.683936
Target:  5'- cGCGCAaagAGUACGuCgGCGGU--UCGGUa -3'
miRNA:   3'- uCGCGU---UCAUGCuG-CGCCGguAGUCG- -5'
26156 5' -55.4 NC_005342.2 + 23483 0.66 0.672888
Target:  5'- cGGCgGCGGGUACG-UGCcgGGCUAcCAGUa -3'
miRNA:   3'- -UCG-CGUUCAUGCuGCG--CCGGUaGUCG- -5'
26156 5' -55.4 NC_005342.2 + 15459 0.66 0.672888
Target:  5'- gAGCGCAacaGGgcUGcuCGCGGCgGUCAccgGCg -3'
miRNA:   3'- -UCGCGU---UCauGCu-GCGCCGgUAGU---CG- -5'
26156 5' -55.4 NC_005342.2 + 13326 0.66 0.672888
Target:  5'- cGGCaCGGuGUACgGGCGCGGCacgagCGGCg -3'
miRNA:   3'- -UCGcGUU-CAUG-CUGCGCCGgua--GUCG- -5'
26156 5' -55.4 NC_005342.2 + 27725 0.66 0.672888
Target:  5'- uGCGCGAucGCGGCGCGaaucUgGUCGGCc -3'
miRNA:   3'- uCGCGUUcaUGCUGCGCc---GgUAGUCG- -5'
26156 5' -55.4 NC_005342.2 + 22767 0.66 0.672888
Target:  5'- aGGCGCAucuGUcAUGA-GUGGCaCGUCGGUu -3'
miRNA:   3'- -UCGCGUu--CA-UGCUgCGCCG-GUAGUCG- -5'
26156 5' -55.4 NC_005342.2 + 22869 0.66 0.672888
Target:  5'- cAGCGCGacgaacaccuGGUACGcaacgUGCGGCgCAUCGaacGCa -3'
miRNA:   3'- -UCGCGU----------UCAUGCu----GCGCCG-GUAGU---CG- -5'
26156 5' -55.4 NC_005342.2 + 46948 0.66 0.672888
Target:  5'- cGGCGCAcGcUGCGGCGgCGcGCCAaauGCg -3'
miRNA:   3'- -UCGCGUuC-AUGCUGC-GC-CGGUaguCG- -5'
26156 5' -55.4 NC_005342.2 + 43019 0.66 0.67178
Target:  5'- uGCGCucGUGCcgaucgagccGACGCcggaaaucaugacGGCCAUCuGGCa -3'
miRNA:   3'- uCGCGuuCAUG----------CUGCG-------------CCGGUAG-UCG- -5'
26156 5' -55.4 NC_005342.2 + 40575 0.66 0.6618
Target:  5'- cGGgGCGAGcgacAUGACGCGuGCCugCGGCc -3'
miRNA:   3'- -UCgCGUUCa---UGCUGCGC-CGGuaGUCG- -5'
26156 5' -55.4 NC_005342.2 + 41362 0.66 0.6618
Target:  5'- gGGCGCGGGc----UGCGGCCGUacgcCGGCa -3'
miRNA:   3'- -UCGCGUUCaugcuGCGCCGGUA----GUCG- -5'
26156 5' -55.4 NC_005342.2 + 6679 0.66 0.6618
Target:  5'- gGGCGCAuugGCGACGa-GCCAUgCGuGCa -3'
miRNA:   3'- -UCGCGUucaUGCUGCgcCGGUA-GU-CG- -5'
26156 5' -55.4 NC_005342.2 + 37789 0.66 0.6618
Target:  5'- cGGCGCAcuggaAGccgaGCGACGCGGgCAgu-GCu -3'
miRNA:   3'- -UCGCGU-----UCa---UGCUGCGCCgGUaguCG- -5'
26156 5' -55.4 NC_005342.2 + 17542 0.66 0.6618
Target:  5'- gAGCGCAAGcaGCGugaGCGCGGCgGccuUC-GCg -3'
miRNA:   3'- -UCGCGUUCa-UGC---UGCGCCGgU---AGuCG- -5'
26156 5' -55.4 NC_005342.2 + 45979 0.66 0.6618
Target:  5'- cGGCGCGAG-ACG-CGCccaGCCcUCGGUc -3'
miRNA:   3'- -UCGCGUUCaUGCuGCGc--CGGuAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.