miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26156 5' -55.4 NC_005342.2 + 11776 1.12 0.000438
Target:  5'- gAGCGCAAGUACGACGCGGCCAUCAGCg -3'
miRNA:   3'- -UCGCGUUCAUGCUGCGCCGGUAGUCG- -5'
26156 5' -55.4 NC_005342.2 + 11862 0.71 0.371432
Target:  5'- gGGCGCGAGcaccuuguCGuCGCGGCC--CGGCa -3'
miRNA:   3'- -UCGCGUUCau------GCuGCGCCGGuaGUCG- -5'
26156 5' -55.4 NC_005342.2 + 2408 0.71 0.380342
Target:  5'- cGUGCcuuGGUACGGCGCGGCgAaCAcuuGCg -3'
miRNA:   3'- uCGCGu--UCAUGCUGCGCCGgUaGU---CG- -5'
26156 5' -55.4 NC_005342.2 + 27295 0.66 0.683936
Target:  5'- cGGCGaaaccgAUGAUGCGGCCA--GGCu -3'
miRNA:   3'- -UCGCguuca-UGCUGCGCCGGUagUCG- -5'
26156 5' -55.4 NC_005342.2 + 28494 0.78 0.125533
Target:  5'- cGCGCGGGUcgcgGCGGCGCGGCUgcccaucacGUaCAGCg -3'
miRNA:   3'- uCGCGUUCA----UGCUGCGCCGG---------UA-GUCG- -5'
26156 5' -55.4 NC_005342.2 + 28622 0.78 0.136619
Target:  5'- cGGCGCAGGc-CGGCGCGuacuuGCCGUCGGUg -3'
miRNA:   3'- -UCGCGUUCauGCUGCGC-----CGGUAGUCG- -5'
26156 5' -55.4 NC_005342.2 + 15251 0.76 0.170698
Target:  5'- cGUGCugcgGCGGCGCGGUCAgcaUCAGCa -3'
miRNA:   3'- uCGCGuucaUGCUGCGCCGGU---AGUCG- -5'
26156 5' -55.4 NC_005342.2 + 1480 0.75 0.201058
Target:  5'- uGCGCGAGcgACGGCGaguCGGCCugcagcgugaucGUCAGCg -3'
miRNA:   3'- uCGCGUUCa-UGCUGC---GCCGG------------UAGUCG- -5'
26156 5' -55.4 NC_005342.2 + 33061 0.74 0.255318
Target:  5'- uGCGCGAGaACGGCGCG-CCGUCGu- -3'
miRNA:   3'- uCGCGUUCaUGCUGCGCcGGUAGUcg -5'
26156 5' -55.4 NC_005342.2 + 38014 0.72 0.32102
Target:  5'- cGCGCGAccGUGC-ACGCGGCgAcCGGCg -3'
miRNA:   3'- uCGCGUU--CAUGcUGCGCCGgUaGUCG- -5'
26156 5' -55.4 NC_005342.2 + 10721 0.73 0.283059
Target:  5'- cGGCGUAucGUACcGCGCGGCC--CGGCg -3'
miRNA:   3'- -UCGCGUu-CAUGcUGCGCCGGuaGUCG- -5'
26156 5' -55.4 NC_005342.2 + 9569 0.74 0.24874
Target:  5'- cAGCGCcAGc-CGGCGCGGC-AUCGGCc -3'
miRNA:   3'- -UCGCGuUCauGCUGCGCCGgUAGUCG- -5'
26156 5' -55.4 NC_005342.2 + 27874 0.85 0.046776
Target:  5'- uGCGUucGAGUACGGCGgcaucacuuCGGCCAUCAGCg -3'
miRNA:   3'- uCGCG--UUCAUGCUGC---------GCCGGUAGUCG- -5'
26156 5' -55.4 NC_005342.2 + 19630 0.73 0.283059
Target:  5'- gAGCGCGGc--CGACGCuGGCCGUCAacaGCu -3'
miRNA:   3'- -UCGCGUUcauGCUGCG-CCGGUAGU---CG- -5'
26156 5' -55.4 NC_005342.2 + 10174 0.81 0.086513
Target:  5'- cGCGCAc--GCGcAUGCGGCCGUCGGCa -3'
miRNA:   3'- uCGCGUucaUGC-UGCGCCGGUAGUCG- -5'
26156 5' -55.4 NC_005342.2 + 30797 0.75 0.201058
Target:  5'- gAGCGCcugcAGGUuCGGCGCcuGGcCCGUCAGCg -3'
miRNA:   3'- -UCGCG----UUCAuGCUGCG--CC-GGUAGUCG- -5'
26156 5' -55.4 NC_005342.2 + 31997 0.72 0.312353
Target:  5'- uGGCGCGGGUcgGCGGCGauGUCgacgugcGUCAGCa -3'
miRNA:   3'- -UCGCGUUCA--UGCUGCgcCGG-------UAGUCG- -5'
26156 5' -55.4 NC_005342.2 + 25518 0.71 0.371432
Target:  5'- gAGCGCGuccuGGUACG-CGCcGCUcgauGUCAGCg -3'
miRNA:   3'- -UCGCGU----UCAUGCuGCGcCGG----UAGUCG- -5'
26156 5' -55.4 NC_005342.2 + 5532 0.78 0.124472
Target:  5'- uGGCGCGAGUGCagaccguucagcucGAuugUGCGGCCAUCGGg -3'
miRNA:   3'- -UCGCGUUCAUG--------------CU---GCGCCGGUAGUCg -5'
26156 5' -55.4 NC_005342.2 + 19859 0.76 0.170228
Target:  5'- uGGCGCGAGUGCGaccgauuacgcccGCGCucagcagcucugGGCCAUCcGCg -3'
miRNA:   3'- -UCGCGUUCAUGC-------------UGCG------------CCGGUAGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.