miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26161 3' -56.2 NC_005342.2 + 32319 0.66 0.628889
Target:  5'- cGCGAGC-GCGcCGcGC-GAcGUCGGCa -3'
miRNA:   3'- -CGCUCGaCGCaGUaCGaCUaCGGCCG- -5'
26161 3' -56.2 NC_005342.2 + 41830 0.66 0.617799
Target:  5'- cGCGAGgUGCGcCA-GU---UGCCGGUg -3'
miRNA:   3'- -CGCUCgACGCaGUaCGacuACGGCCG- -5'
26161 3' -56.2 NC_005342.2 + 25282 0.66 0.617799
Target:  5'- aGCGuGUucgGCGUCGcaaccggGCcGAcGCCGGCg -3'
miRNA:   3'- -CGCuCGa--CGCAGUa------CGaCUaCGGCCG- -5'
26161 3' -56.2 NC_005342.2 + 47396 0.66 0.617799
Target:  5'- cGCGAGCacaugaaaaaaUGCGUCGaGUUcaucGGUGCgcuCGGCa -3'
miRNA:   3'- -CGCUCG-----------ACGCAGUaCGA----CUACG---GCCG- -5'
26161 3' -56.2 NC_005342.2 + 32154 0.66 0.606722
Target:  5'- cGCGGcGCUGaaCGUCGUGCUGcgcacGCUaucgGGCa -3'
miRNA:   3'- -CGCU-CGAC--GCAGUACGACua---CGG----CCG- -5'
26161 3' -56.2 NC_005342.2 + 37414 0.66 0.595667
Target:  5'- cGCGuGGCgGC-UCAauggccUGCUcGAUGUCGGCa -3'
miRNA:   3'- -CGC-UCGaCGcAGU------ACGA-CUACGGCCG- -5'
26161 3' -56.2 NC_005342.2 + 45377 0.66 0.595667
Target:  5'- cGCGcGCUGCG-CAUGCaccuaccGA-GCgGGCg -3'
miRNA:   3'- -CGCuCGACGCaGUACGa------CUaCGgCCG- -5'
26161 3' -56.2 NC_005342.2 + 28314 0.66 0.595667
Target:  5'- uCGAgGCucguucggaUGCGaCGUGCUGAUGCgGuGCa -3'
miRNA:   3'- cGCU-CG---------ACGCaGUACGACUACGgC-CG- -5'
26161 3' -56.2 NC_005342.2 + 3055 0.66 0.595667
Target:  5'- cGCGcGCUaCGUCGcgGCgGAcgcGCCGGCg -3'
miRNA:   3'- -CGCuCGAcGCAGUa-CGaCUa--CGGCCG- -5'
26161 3' -56.2 NC_005342.2 + 36958 0.66 0.595667
Target:  5'- cGUGAGCggcGUGUCGccgcgcUGCggGAUGCC-GCa -3'
miRNA:   3'- -CGCUCGa--CGCAGU------ACGa-CUACGGcCG- -5'
26161 3' -56.2 NC_005342.2 + 18105 0.66 0.595667
Target:  5'- gGCGGGCaGCGcgaUCAgcGCUaGAacucgGCCGGCu -3'
miRNA:   3'- -CGCUCGaCGC---AGUa-CGA-CUa----CGGCCG- -5'
26161 3' -56.2 NC_005342.2 + 35973 0.66 0.594563
Target:  5'- uCGGGCuUGCGcccaaucUCGUGCUcGUGCaGGCg -3'
miRNA:   3'- cGCUCG-ACGC-------AGUACGAcUACGgCCG- -5'
26161 3' -56.2 NC_005342.2 + 1960 0.66 0.584643
Target:  5'- uGCGAGUUcgucaGCGUCAcGCccgcgcggaUGAUGCCGa- -3'
miRNA:   3'- -CGCUCGA-----CGCAGUaCG---------ACUACGGCcg -5'
26161 3' -56.2 NC_005342.2 + 30833 0.66 0.584643
Target:  5'- cGCGAGCUGCugcUCGcGCgcGAgcCCGGCg -3'
miRNA:   3'- -CGCUCGACGc--AGUaCGa-CUacGGCCG- -5'
26161 3' -56.2 NC_005342.2 + 2716 0.66 0.584643
Target:  5'- cGCGAcGCUGCaggcugccgguGUCGccGCcGAUacGCCGGCg -3'
miRNA:   3'- -CGCU-CGACG-----------CAGUa-CGaCUA--CGGCCG- -5'
26161 3' -56.2 NC_005342.2 + 25487 0.67 0.562725
Target:  5'- cCGGGUUgcGCGUCAUGaaguagaUGcgGCCGaGCg -3'
miRNA:   3'- cGCUCGA--CGCAGUACg------ACuaCGGC-CG- -5'
26161 3' -56.2 NC_005342.2 + 30094 0.67 0.562725
Target:  5'- gGCGGGUgGCGUC--GCaGGUGCgaCGGCg -3'
miRNA:   3'- -CGCUCGaCGCAGuaCGaCUACG--GCCG- -5'
26161 3' -56.2 NC_005342.2 + 41923 0.67 0.562725
Target:  5'- uCGGGCgugaGCGUCAUGUcgUGca-CCGGCa -3'
miRNA:   3'- cGCUCGa---CGCAGUACG--ACuacGGCCG- -5'
26161 3' -56.2 NC_005342.2 + 27347 0.67 0.548596
Target:  5'- aCGAGUggGUGUCAUGgUGcgguagccguggaaGUGCCcGGCg -3'
miRNA:   3'- cGCUCGa-CGCAGUACgAC--------------UACGG-CCG- -5'
26161 3' -56.2 NC_005342.2 + 27915 0.67 0.536729
Target:  5'- gGUGaAGCUcaGCGaCGUGCUGAaagcgaucugcacGCCGGCu -3'
miRNA:   3'- -CGC-UCGA--CGCaGUACGACUa------------CGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.