miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26163 3' -56.8 NC_005342.2 + 26523 0.66 0.591778
Target:  5'- -gGCg-CGCCgaCAGGUGCGGcgaacUGCACg -3'
miRNA:   3'- agCGaaGCGGg-GUUCACGCCu----ACGUG- -5'
26163 3' -56.8 NC_005342.2 + 6662 0.66 0.591778
Target:  5'- cCGC--CGCUUCAcGUGCGGG-GCGCa -3'
miRNA:   3'- aGCGaaGCGGGGUuCACGCCUaCGUG- -5'
26163 3' -56.8 NC_005342.2 + 28941 0.66 0.580751
Target:  5'- cCGCcgUUGCCCCAAuccUGGAUGUGCu -3'
miRNA:   3'- aGCGa-AGCGGGGUUcacGCCUACGUG- -5'
26163 3' -56.8 NC_005342.2 + 15979 0.66 0.569769
Target:  5'- cCGUgacUUGCCCCGAuUGUGGcgGCGa -3'
miRNA:   3'- aGCGa--AGCGGGGUUcACGCCuaCGUg -5'
26163 3' -56.8 NC_005342.2 + 29633 0.66 0.558838
Target:  5'- gCGCUUCGCCgCGAaUGaccagucgacCGGcgGCGCg -3'
miRNA:   3'- aGCGAAGCGGgGUUcAC----------GCCuaCGUG- -5'
26163 3' -56.8 NC_005342.2 + 42755 0.66 0.558838
Target:  5'- cCGC-UCGUCCgccggcgaGGGUGCGGGUugcaGCGCa -3'
miRNA:   3'- aGCGaAGCGGGg-------UUCACGCCUA----CGUG- -5'
26163 3' -56.8 NC_005342.2 + 27176 0.66 0.537163
Target:  5'- aUGCgu-GCCCCcgAGGUGUGGcgGCAg -3'
miRNA:   3'- aGCGaagCGGGG--UUCACGCCuaCGUg -5'
26163 3' -56.8 NC_005342.2 + 28356 0.67 0.526434
Target:  5'- cUCGCUUacgaGCgCCCAAGuUGCuGGAUuGCGg -3'
miRNA:   3'- -AGCGAAg---CG-GGGUUC-ACG-CCUA-CGUg -5'
26163 3' -56.8 NC_005342.2 + 18513 0.67 0.505227
Target:  5'- aCGCUgcagcggccuUCGCagccggcggcaaCCCGGGUGCGGcagccgGCGCg -3'
miRNA:   3'- aGCGA----------AGCG------------GGGUUCACGCCua----CGUG- -5'
26163 3' -56.8 NC_005342.2 + 43290 0.67 0.474135
Target:  5'- gUCGCgcgcUCGCCUCGAacGCGaGUGCGCg -3'
miRNA:   3'- -AGCGa---AGCGGGGUUcaCGCcUACGUG- -5'
26163 3' -56.8 NC_005342.2 + 25901 0.69 0.415032
Target:  5'- gCGCUUCGCCgCCc--UGCGcuUGCACg -3'
miRNA:   3'- aGCGAAGCGG-GGuucACGCcuACGUG- -5'
26163 3' -56.8 NC_005342.2 + 37830 0.69 0.405627
Target:  5'- gUGCUUCGCaUCCAGGU-CGGG-GCGCc -3'
miRNA:   3'- aGCGAAGCG-GGGUUCAcGCCUaCGUG- -5'
26163 3' -56.8 NC_005342.2 + 25168 0.69 0.396357
Target:  5'- cUCGCcgUGCCCgGGGUGaCGGAUuGCuACg -3'
miRNA:   3'- -AGCGaaGCGGGgUUCAC-GCCUA-CG-UG- -5'
26163 3' -56.8 NC_005342.2 + 13693 0.7 0.360672
Target:  5'- cUCGCgcaGCugCCCGAGUaccGCGcGAUGCACg -3'
miRNA:   3'- -AGCGaagCG--GGGUUCA---CGC-CUACGUG- -5'
26163 3' -56.8 NC_005342.2 + 9423 0.72 0.254058
Target:  5'- uUCGCcgucuugCGCgCCAAGUGCGGGcgccGCACc -3'
miRNA:   3'- -AGCGaa-----GCGgGGUUCACGCCUa---CGUG- -5'
26163 3' -56.8 NC_005342.2 + 6740 0.77 0.114608
Target:  5'- gUCGCcaaugCGCCCCGcacgugaAGcgGCGGAUGCGCg -3'
miRNA:   3'- -AGCGaa---GCGGGGU-------UCa-CGCCUACGUG- -5'
26163 3' -56.8 NC_005342.2 + 13570 1.1 0.000457
Target:  5'- aUCGCUUCGCCCCAAGUGCGGAUGCACu -3'
miRNA:   3'- -AGCGAAGCGGGGUUCACGCCUACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.