miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26163 5' -58.6 NC_005342.2 + 6624 0.66 0.506191
Target:  5'- cUCG-GCAgCGCGCUcGGcgcGCUCGaGCAGg -3'
miRNA:   3'- -AGCaCGUaGCGCGA-CC---UGAGCcCGUC- -5'
26163 5' -58.6 NC_005342.2 + 19490 0.66 0.485745
Target:  5'- aUCG-GCGcuggCGCGCUGGcggcGCUCGuGGCc- -3'
miRNA:   3'- -AGCaCGUa---GCGCGACC----UGAGC-CCGuc -5'
26163 5' -58.6 NC_005342.2 + 44154 0.67 0.446093
Target:  5'- gCGUGCGagGCGCuUGGcCUgcCGGuGCAGa -3'
miRNA:   3'- aGCACGUagCGCG-ACCuGA--GCC-CGUC- -5'
26163 5' -58.6 NC_005342.2 + 4552 0.67 0.446093
Target:  5'- aCGaUGCcgagGUCGCaaUGGGCcagaUCGGGCAGg -3'
miRNA:   3'- aGC-ACG----UAGCGcgACCUG----AGCCCGUC- -5'
26163 5' -58.6 NC_005342.2 + 28547 0.67 0.408312
Target:  5'- cCGcGCgGUCGaCGC-GGcGCUCGGGCAGu -3'
miRNA:   3'- aGCaCG-UAGC-GCGaCC-UGAGCCCGUC- -5'
26163 5' -58.6 NC_005342.2 + 22339 0.68 0.372596
Target:  5'- gUCG-GCGucUCGgGCUGG-CUUGGcGCAGa -3'
miRNA:   3'- -AGCaCGU--AGCgCGACCuGAGCC-CGUC- -5'
26163 5' -58.6 NC_005342.2 + 32766 0.68 0.35639
Target:  5'- aCGUGCGUagcggucggccacgaGCGCUGGcaACUCGGuCAGc -3'
miRNA:   3'- aGCACGUAg--------------CGCGACC--UGAGCCcGUC- -5'
26163 5' -58.6 NC_005342.2 + 45512 0.69 0.307777
Target:  5'- aUCG-GCAcguUCGCGCcGGGCUCGagauGCAGg -3'
miRNA:   3'- -AGCaCGU---AGCGCGaCCUGAGCc---CGUC- -5'
26163 5' -58.6 NC_005342.2 + 41401 0.7 0.299569
Target:  5'- cUCGUGC-UCGaCGC-GGGCggcaacuUCGGGCGGc -3'
miRNA:   3'- -AGCACGuAGC-GCGaCCUG-------AGCCCGUC- -5'
26163 5' -58.6 NC_005342.2 + 26075 0.7 0.285793
Target:  5'- gCG-GCG--GCGCUuccGGAUUCGGGCAGg -3'
miRNA:   3'- aGCaCGUagCGCGA---CCUGAGCCCGUC- -5'
26163 5' -58.6 NC_005342.2 + 36795 0.71 0.251936
Target:  5'- uUUGcGCGgauUCGCGCUaucgaGGACgUCGGGCAGc -3'
miRNA:   3'- -AGCaCGU---AGCGCGA-----CCUG-AGCCCGUC- -5'
26163 5' -58.6 NC_005342.2 + 21034 0.72 0.215745
Target:  5'- cCGcGCAgUGCuGCUccuggGGACUCGGGCAGg -3'
miRNA:   3'- aGCaCGUaGCG-CGA-----CCUGAGCCCGUC- -5'
26163 5' -58.6 NC_005342.2 + 47129 0.73 0.189075
Target:  5'- uUCGUGCGgcguUUGCGCUuugGcGGCUCGGGCu- -3'
miRNA:   3'- -AGCACGU----AGCGCGA---C-CUGAGCCCGuc -5'
26163 5' -58.6 NC_005342.2 + 13611 0.92 0.007577
Target:  5'- uUCGUGCAUCGCGC-GGuACUCGGGCAGc -3'
miRNA:   3'- -AGCACGUAGCGCGaCC-UGAGCCCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.