miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26164 3' -66.3 NC_005342.2 + 23980 0.66 0.22626
Target:  5'- aGACGCUGacguaCGCGCCGUUCG-GCuuccgcacgaugaacGGCGg -3'
miRNA:   3'- -CUGCGGC-----GCGCGGCGAGCgCG---------------CCGCa -5'
26164 3' -66.3 NC_005342.2 + 15444 0.66 0.22626
Target:  5'- cGCGCUugGCGUGCCgagcgcaacagggcuGCUCGCGgcggucacCGGCGg -3'
miRNA:   3'- cUGCGG--CGCGCGG---------------CGAGCGC--------GCCGCa -5'
26164 3' -66.3 NC_005342.2 + 31095 0.66 0.224036
Target:  5'- gGGCGCCGUGCucggcgucGgCGCagGUGCGGCc- -3'
miRNA:   3'- -CUGCGGCGCG--------CgGCGagCGCGCCGca -5'
26164 3' -66.3 NC_005342.2 + 21862 0.66 0.224036
Target:  5'- aACGCUuucaGCuGCCaCUCGCGCGGCa- -3'
miRNA:   3'- cUGCGGcg--CG-CGGcGAGCGCGCCGca -5'
26164 3' -66.3 NC_005342.2 + 28705 0.66 0.224036
Target:  5'- --aGCUGCGCgGCCGCcggaUCGgCGUGuGCGUc -3'
miRNA:   3'- cugCGGCGCG-CGGCG----AGC-GCGC-CGCA- -5'
26164 3' -66.3 NC_005342.2 + 20575 0.66 0.224036
Target:  5'- cGGCGCgGCG-GCgGCcggcagcggUUGCGCGGCa- -3'
miRNA:   3'- -CUGCGgCGCgCGgCG---------AGCGCGCCGca -5'
26164 3' -66.3 NC_005342.2 + 23044 0.66 0.223483
Target:  5'- cGGCGaccgguaCCGCGaCGCUGC-CG-GCGGCGa -3'
miRNA:   3'- -CUGC-------GGCGC-GCGGCGaGCgCGCCGCa -5'
26164 3' -66.3 NC_005342.2 + 14390 0.66 0.223483
Target:  5'- cAUGCCGcCGUGUCGCgCGUcuacaucgaagaaGCGGCGa -3'
miRNA:   3'- cUGCGGC-GCGCGGCGaGCG-------------CGCCGCa -5'
26164 3' -66.3 NC_005342.2 + 25591 0.66 0.223483
Target:  5'- cACGCgGCGacgauaaacgccuCGCUGCUUGCgagcugcccuuGCGGCGUc -3'
miRNA:   3'- cUGCGgCGC-------------GCGGCGAGCG-----------CGCCGCA- -5'
26164 3' -66.3 NC_005342.2 + 16980 0.66 0.220734
Target:  5'- uACGCCGUcgccGCGCuCGaCUCGUGCacgcugcaggccaauGGCGUc -3'
miRNA:   3'- cUGCGGCG----CGCG-GC-GAGCGCG---------------CCGCA- -5'
26164 3' -66.3 NC_005342.2 + 32177 0.66 0.220734
Target:  5'- aGCGCCGCGacgaGCCGCagcaUGUaaccggacaacaccaGCGGCGa -3'
miRNA:   3'- cUGCGGCGCg---CGGCGa---GCG---------------CGCCGCa -5'
26164 3' -66.3 NC_005342.2 + 29951 0.66 0.218556
Target:  5'- cGCGCCGCGCGCgaucagCGCGUucaugacauacaGGCGg -3'
miRNA:   3'- cUGCGGCGCGCGgcga--GCGCG------------CCGCa -5'
26164 3' -66.3 NC_005342.2 + 38662 0.66 0.218556
Target:  5'- cGGCGCgG-GUGCgCGgaCGgGCGGCGUu -3'
miRNA:   3'- -CUGCGgCgCGCG-GCgaGCgCGCCGCA- -5'
26164 3' -66.3 NC_005342.2 + 25952 0.66 0.218556
Target:  5'- aGCGCgGCGCuuGgCGCUCGCGCaccaaGCGc -3'
miRNA:   3'- cUGCGgCGCG--CgGCGAGCGCGc----CGCa -5'
26164 3' -66.3 NC_005342.2 + 41489 0.66 0.218556
Target:  5'- cGCGCCGUGCcgcccgaaguuGCCGCcCGCGuCGaGCa- -3'
miRNA:   3'- cUGCGGCGCG-----------CGGCGaGCGC-GC-CGca -5'
26164 3' -66.3 NC_005342.2 + 33242 0.66 0.215323
Target:  5'- gGAuCGCCcgGCGCGCCGCUgccaaugcugccggaCuCGCGGCu- -3'
miRNA:   3'- -CU-GCGG--CGCGCGGCGA---------------GcGCGCCGca -5'
26164 3' -66.3 NC_005342.2 + 6571 0.66 0.213191
Target:  5'- -cCGCCacgGCGCGCCGCccaGCGCcGCa- -3'
miRNA:   3'- cuGCGG---CGCGCGGCGag-CGCGcCGca -5'
26164 3' -66.3 NC_005342.2 + 30122 0.66 0.213191
Target:  5'- cGGCGCCggaccgaauucGCGCGCCGUagcgacugccUCGCGCcaCGUc -3'
miRNA:   3'- -CUGCGG-----------CGCGCGGCG----------AGCGCGccGCA- -5'
26164 3' -66.3 NC_005342.2 + 44759 0.66 0.213191
Target:  5'- uGGCGgCGCGCagaCGCUgaacacCGCGCGGCc- -3'
miRNA:   3'- -CUGCgGCGCGcg-GCGA------GCGCGCCGca -5'
26164 3' -66.3 NC_005342.2 + 42481 0.66 0.213191
Target:  5'- aACGCCGC---CCGCUCGUcgGCcGGCGUg -3'
miRNA:   3'- cUGCGGCGcgcGGCGAGCG--CG-CCGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.