Results 1 - 20 of 194 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 15444 | 0.66 | 0.22626 |
Target: 5'- cGCGCUugGCGUGCCgagcgcaacagggcuGCUCGCGgcggucacCGGCGg -3' miRNA: 3'- cUGCGG--CGCGCGG---------------CGAGCGC--------GCCGCa -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 25647 | 0.66 | 0.212661 |
Target: 5'- -uCGCCGCguggcaaGCGCUGUUUGCGCaGCu- -3' miRNA: 3'- cuGCGGCG-------CGCGGCGAGCGCGcCGca -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 30922 | 0.66 | 0.207939 |
Target: 5'- cGGCGaCGCGUucGCCggGCUCGCGC-GCGa -3' miRNA: 3'- -CUGCgGCGCG--CGG--CGAGCGCGcCGCa -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 45241 | 0.66 | 0.207939 |
Target: 5'- gGACGCCGUaguugGcCGCCauGCUCGCGaaugcgccguCGGCGc -3' miRNA: 3'- -CUGCGGCG-----C-GCGG--CGAGCGC----------GCCGCa -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 28985 | 0.66 | 0.2028 |
Target: 5'- cGACGCCaUGCGCgGgUgCGCGCaGCGa -3' miRNA: 3'- -CUGCGGcGCGCGgCgA-GCGCGcCGCa -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 18384 | 0.66 | 0.2028 |
Target: 5'- cGGCGUgaggauCGUGCGCaCGCgCGUGCcGGCGa -3' miRNA: 3'- -CUGCG------GCGCGCG-GCGaGCGCG-CCGCa -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 28721 | 0.66 | 0.2028 |
Target: 5'- -gUGCCucgGCGCGCCGCUgCGCaccgaCGGCa- -3' miRNA: 3'- cuGCGG---CGCGCGGCGA-GCGc----GCCGca -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 25689 | 0.66 | 0.2028 |
Target: 5'- cGACGCCGCaaGgGCaGCUCGCaaGCaGCGa -3' miRNA: 3'- -CUGCGGCG--CgCGgCGAGCG--CGcCGCa -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 6862 | 0.66 | 0.197771 |
Target: 5'- -cCGCCGgaGUGCCGCcgUUGCGacaGGCGa -3' miRNA: 3'- cuGCGGCg-CGCGGCG--AGCGCg--CCGCa -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 42481 | 0.66 | 0.213191 |
Target: 5'- aACGCCGC---CCGCUCGUcgGCcGGCGUg -3' miRNA: 3'- cUGCGGCGcgcGGCGAGCG--CG-CCGCA- -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 20629 | 0.66 | 0.213191 |
Target: 5'- cGAC-CCGaCGCGCCGacgaUCagcgGCGCGGCc- -3' miRNA: 3'- -CUGcGGC-GCGCGGCg---AG----CGCGCCGca -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 33242 | 0.66 | 0.215323 |
Target: 5'- gGAuCGCCcgGCGCGCCGCUgccaaugcugccggaCuCGCGGCu- -3' miRNA: 3'- -CU-GCGG--CGCGCGGCGA---------------GcGCGCCGca -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 20575 | 0.66 | 0.224036 |
Target: 5'- cGGCGCgGCG-GCgGCcggcagcggUUGCGCGGCa- -3' miRNA: 3'- -CUGCGgCGCgCGgCG---------AGCGCGCCGca -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 31095 | 0.66 | 0.224036 |
Target: 5'- gGGCGCCGUGCucggcgucGgCGCagGUGCGGCc- -3' miRNA: 3'- -CUGCGGCGCG--------CgGCGagCGCGCCGca -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 21862 | 0.66 | 0.224036 |
Target: 5'- aACGCUuucaGCuGCCaCUCGCGCGGCa- -3' miRNA: 3'- cUGCGGcg--CG-CGGcGAGCGCGCCGca -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 23044 | 0.66 | 0.223483 |
Target: 5'- cGGCGaccgguaCCGCGaCGCUGC-CG-GCGGCGa -3' miRNA: 3'- -CUGC-------GGCGC-GCGGCGaGCgCGCCGCa -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 14390 | 0.66 | 0.223483 |
Target: 5'- cAUGCCGcCGUGUCGCgCGUcuacaucgaagaaGCGGCGa -3' miRNA: 3'- cUGCGGC-GCGCGGCGaGCG-------------CGCCGCa -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 41489 | 0.66 | 0.218556 |
Target: 5'- cGCGCCGUGCcgcccgaaguuGCCGCcCGCGuCGaGCa- -3' miRNA: 3'- cUGCGGCGCG-----------CGGCGaGCGC-GC-CGca -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 25952 | 0.66 | 0.218556 |
Target: 5'- aGCGCgGCGCuuGgCGCUCGCGCaccaaGCGc -3' miRNA: 3'- cUGCGgCGCG--CgGCGAGCGCGc----CGCa -5' |
|||||||
26164 | 3' | -66.3 | NC_005342.2 | + | 38662 | 0.66 | 0.218556 |
Target: 5'- cGGCGCgG-GUGCgCGgaCGgGCGGCGUu -3' miRNA: 3'- -CUGCGgCgCGCG-GCgaGCgCGCCGCA- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home