miRNA display CGI


Results 21 - 40 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26164 3' -66.3 NC_005342.2 + 20629 0.66 0.213191
Target:  5'- cGAC-CCGaCGCGCCGacgaUCagcgGCGCGGCc- -3'
miRNA:   3'- -CUGcGGC-GCGCGGCg---AG----CGCGCCGca -5'
26164 3' -66.3 NC_005342.2 + 42481 0.66 0.213191
Target:  5'- aACGCCGC---CCGCUCGUcgGCcGGCGUg -3'
miRNA:   3'- cUGCGGCGcgcGGCGAGCG--CG-CCGCA- -5'
26164 3' -66.3 NC_005342.2 + 25647 0.66 0.212661
Target:  5'- -uCGCCGCguggcaaGCGCUGUUUGCGCaGCu- -3'
miRNA:   3'- cuGCGGCG-------CGCGGCGAGCGCGcCGca -5'
26164 3' -66.3 NC_005342.2 + 31314 0.66 0.207939
Target:  5'- cGACGuuGauaaGCGCCGuCUCGgccgcuguggcCGCGcGCGUg -3'
miRNA:   3'- -CUGCggCg---CGCGGC-GAGC-----------GCGC-CGCA- -5'
26164 3' -66.3 NC_005342.2 + 32741 0.66 0.207939
Target:  5'- cGGCGUCGaucgcuuugaGCGCCGCaCGUGCGuaGCGg -3'
miRNA:   3'- -CUGCGGCg---------CGCGGCGaGCGCGC--CGCa -5'
26164 3' -66.3 NC_005342.2 + 41729 0.66 0.207939
Target:  5'- uGCGCgugaaGCGCGCgGCcaacgaGCGgGGCGUg -3'
miRNA:   3'- cUGCGg----CGCGCGgCGag----CGCgCCGCA- -5'
26164 3' -66.3 NC_005342.2 + 47476 0.66 0.207939
Target:  5'- cACGUCGCGCGCCGUggccUCGUacacccCGGCc- -3'
miRNA:   3'- cUGCGGCGCGCGGCG----AGCGc-----GCCGca -5'
26164 3' -66.3 NC_005342.2 + 10842 0.66 0.207939
Target:  5'- uGACGCCGCGCGggaaGaaCGC-CGGCGc -3'
miRNA:   3'- -CUGCGGCGCGCgg--CgaGCGcGCCGCa -5'
26164 3' -66.3 NC_005342.2 + 2023 0.66 0.207939
Target:  5'- cGACGCC-CGCGCgGUagaGUGCGGUa- -3'
miRNA:   3'- -CUGCGGcGCGCGgCGag-CGCGCCGca -5'
26164 3' -66.3 NC_005342.2 + 17470 0.66 0.207939
Target:  5'- -cCGCCGCGCucacGCUGCUUGCGCu-CGa -3'
miRNA:   3'- cuGCGGCGCG----CGGCGAGCGCGccGCa -5'
26164 3' -66.3 NC_005342.2 + 30922 0.66 0.207939
Target:  5'- cGGCGaCGCGUucGCCggGCUCGCGC-GCGa -3'
miRNA:   3'- -CUGCgGCGCG--CGG--CGAGCGCGcCGCa -5'
26164 3' -66.3 NC_005342.2 + 45241 0.66 0.207939
Target:  5'- gGACGCCGUaguugGcCGCCauGCUCGCGaaugcgccguCGGCGc -3'
miRNA:   3'- -CUGCGGCG-----C-GCGG--CGAGCGC----------GCCGCa -5'
26164 3' -66.3 NC_005342.2 + 7371 0.66 0.204842
Target:  5'- --aGCCGCagguCGCCGUguccuugccuucgaCGCGCGGCGc -3'
miRNA:   3'- cugCGGCGc---GCGGCGa-------------GCGCGCCGCa -5'
26164 3' -66.3 NC_005342.2 + 28721 0.66 0.2028
Target:  5'- -gUGCCucgGCGCGCCGCUgCGCaccgaCGGCa- -3'
miRNA:   3'- cuGCGG---CGCGCGGCGA-GCGc----GCCGca -5'
26164 3' -66.3 NC_005342.2 + 28911 0.66 0.2028
Target:  5'- -uCGCUGCGCGCa-CcCGCGCauGGCGUc -3'
miRNA:   3'- cuGCGGCGCGCGgcGaGCGCG--CCGCA- -5'
26164 3' -66.3 NC_005342.2 + 43156 0.66 0.2028
Target:  5'- uGACGgaCGCGCGCaucgcgCGCUUGCGCGcCGc -3'
miRNA:   3'- -CUGCg-GCGCGCG------GCGAGCGCGCcGCa -5'
26164 3' -66.3 NC_005342.2 + 18384 0.66 0.2028
Target:  5'- cGGCGUgaggauCGUGCGCaCGCgCGUGCcGGCGa -3'
miRNA:   3'- -CUGCG------GCGCGCG-GCGaGCGCG-CCGCa -5'
26164 3' -66.3 NC_005342.2 + 25689 0.66 0.2028
Target:  5'- cGACGCCGCaaGgGCaGCUCGCaaGCaGCGa -3'
miRNA:   3'- -CUGCGGCG--CgCGgCGAGCG--CGcCGCa -5'
26164 3' -66.3 NC_005342.2 + 28985 0.66 0.2028
Target:  5'- cGACGCCaUGCGCgGgUgCGCGCaGCGa -3'
miRNA:   3'- -CUGCGGcGCGCGgCgA-GCGCGcCGCa -5'
26164 3' -66.3 NC_005342.2 + 680 0.66 0.2028
Target:  5'- -gUGCCGcCGC-CCGCgagCGcCGUGGCGa -3'
miRNA:   3'- cuGCGGC-GCGcGGCGa--GC-GCGCCGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.