miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26164 5' -55.1 NC_005342.2 + 7880 0.66 0.724034
Target:  5'- -gGCGcaggCCGCgUCGAuCUGGCGaGCGa -3'
miRNA:   3'- agUGCa---GGUGaAGCUuGACCGCgCGC- -5'
26164 5' -55.1 NC_005342.2 + 294 0.66 0.724034
Target:  5'- -gACGaCCACaUCGAACggcacGGCGUGgGg -3'
miRNA:   3'- agUGCaGGUGaAGCUUGa----CCGCGCgC- -5'
26164 5' -55.1 NC_005342.2 + 43076 0.66 0.724034
Target:  5'- gCGCGaUUCACgUCGAGCaUGGgaaCGCGCa -3'
miRNA:   3'- aGUGC-AGGUGaAGCUUG-ACC---GCGCGc -5'
26164 5' -55.1 NC_005342.2 + 8147 0.66 0.724034
Target:  5'- cCGCGUCCAUcgCGuACUcGGUGaGCGg -3'
miRNA:   3'- aGUGCAGGUGaaGCuUGA-CCGCgCGC- -5'
26164 5' -55.1 NC_005342.2 + 13153 0.66 0.713306
Target:  5'- cUCGCGaugCCguACaUCGAcaACUGGCuGCGCa -3'
miRNA:   3'- -AGUGCa--GG--UGaAGCU--UGACCG-CGCGc -5'
26164 5' -55.1 NC_005342.2 + 9116 0.66 0.712228
Target:  5'- gCACGUCgCGCUUUGccugcucgaccgcAGCU-GCGCGCu -3'
miRNA:   3'- aGUGCAG-GUGAAGC-------------UUGAcCGCGCGc -5'
26164 5' -55.1 NC_005342.2 + 12323 0.66 0.702497
Target:  5'- uUCACGUUCGCgaCGGucgGGgGCGCc -3'
miRNA:   3'- -AGUGCAGGUGaaGCUugaCCgCGCGc -5'
26164 5' -55.1 NC_005342.2 + 41005 0.66 0.702497
Target:  5'- -gGCGgCgACUUCGAcgaggccgaGCUcgcccGGCGCGCGa -3'
miRNA:   3'- agUGCaGgUGAAGCU---------UGA-----CCGCGCGC- -5'
26164 5' -55.1 NC_005342.2 + 45374 0.66 0.702497
Target:  5'- aUCACGaUCuCGCgacCGGGCUGGUcgaGCGCc -3'
miRNA:   3'- -AGUGC-AG-GUGaa-GCUUGACCG---CGCGc -5'
26164 5' -55.1 NC_005342.2 + 26249 0.66 0.690528
Target:  5'- aCGCGaCUGCUUCgcuGAACgugaggcaguaugUGGCGCGCa -3'
miRNA:   3'- aGUGCaGGUGAAG---CUUG-------------ACCGCGCGc -5'
26164 5' -55.1 NC_005342.2 + 5525 0.66 0.680683
Target:  5'- uUCAgguCGUCUACgccgaagCGAAgUGGCuGCGCa -3'
miRNA:   3'- -AGU---GCAGGUGaa-----GCUUgACCG-CGCGc -5'
26164 5' -55.1 NC_005342.2 + 41101 0.66 0.6697
Target:  5'- gUCACGUCCAUcgCGcGCcgGGCGaGCu -3'
miRNA:   3'- -AGUGCAGGUGaaGCuUGa-CCGCgCGc -5'
26164 5' -55.1 NC_005342.2 + 26602 0.66 0.6697
Target:  5'- gCGCGUUCACgacaaAGCUGGCG-GCGu -3'
miRNA:   3'- aGUGCAGGUGaagc-UUGACCGCgCGC- -5'
26164 5' -55.1 NC_005342.2 + 6922 0.67 0.658682
Target:  5'- cCGCGaUCCGC-UCGA--UGGCuGCGCa -3'
miRNA:   3'- aGUGC-AGGUGaAGCUugACCG-CGCGc -5'
26164 5' -55.1 NC_005342.2 + 20946 0.67 0.658682
Target:  5'- cUACG-CCACggggCGGACgcaaacGCGCGCGg -3'
miRNA:   3'- aGUGCaGGUGaa--GCUUGac----CGCGCGC- -5'
26164 5' -55.1 NC_005342.2 + 11021 0.67 0.658682
Target:  5'- gCGCGcCCGggUCGAAUUcucgaccgccgGGCGUGCGg -3'
miRNA:   3'- aGUGCaGGUgaAGCUUGA-----------CCGCGCGC- -5'
26164 5' -55.1 NC_005342.2 + 29465 0.67 0.657578
Target:  5'- gCACG-CCGCUcuggcgUuggaugccguugaCGAGCUGGCGCGgGu -3'
miRNA:   3'- aGUGCaGGUGA------A-------------GCUUGACCGCGCgC- -5'
26164 5' -55.1 NC_005342.2 + 45372 0.67 0.652058
Target:  5'- aCGCGcgCgCGCUgcgcaugcaccuacCGAGCgGGCGCGCGa -3'
miRNA:   3'- aGUGCa-G-GUGAa-------------GCUUGaCCGCGCGC- -5'
26164 5' -55.1 NC_005342.2 + 14376 0.67 0.635475
Target:  5'- gCGCGUCUACaUCGAagaagcgGCgaacGGCGcCGCGc -3'
miRNA:   3'- aGUGCAGGUGaAGCU-------UGa---CCGC-GCGC- -5'
26164 5' -55.1 NC_005342.2 + 4619 0.67 0.624413
Target:  5'- aUCGCGaUCAUggCGAcgggcagGCcGGCGCGCGg -3'
miRNA:   3'- -AGUGCaGGUGaaGCU-------UGaCCGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.