Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
2617 | 3' | -50.8 | NC_001488.1 | + | 1284 | 0.66 | 0.418791 |
Target: 5'- aGCAGGaGGUcagcuccucugcucUUG---GCAGCCCCcaguucaugcagACCCu -3' miRNA: 3'- -UGUCC-CCA--------------AAUuuuUGUCGGGG------------UGGG- -5' |
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2617 | 3' | -50.8 | NC_001488.1 | + | 1595 | 0.68 | 0.29199 |
Target: 5'- gGCAGGGuGga-GAAAGCAGCCa-GCCa -3' miRNA: 3'- -UGUCCC-CaaaUUUUUGUCGGggUGGg -5' |
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2617 | 3' | -50.8 | NC_001488.1 | + | 442 | 0.68 | 0.29199 |
Target: 5'- uCAGGaGGUgccgaggccgGGAGACGGUCCCACg- -3' miRNA: 3'- uGUCC-CCAaa--------UUUUUGUCGGGGUGgg -5' |
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2617 | 3' | -50.8 | NC_001488.1 | + | 8623 | 0.68 | 0.29199 |
Target: 5'- uCAGGaGGUgccgaggccgGGAGACGGUCCCACg- -3' miRNA: 3'- uGUCC-CCAaa--------UUUUUGUCGGGGUGgg -5' |
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2617 | 3' | -50.8 | NC_001488.1 | + | 5091 | 0.69 | 0.261968 |
Target: 5'- cCGGGGGgagccgucuaugGAGAGCAaggcuGCCCCGgCCg -3' miRNA: 3'- uGUCCCCaaa---------UUUUUGU-----CGGGGUgGG- -5' |
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2617 | 3' | -50.8 | NC_001488.1 | + | 1492 | 0.7 | 0.214853 |
Target: 5'- gGCAGGGccccUAAGAauGCAGgcuaauaaCCCCGCCCa -3' miRNA: 3'- -UGUCCCcaa-AUUUU--UGUC--------GGGGUGGG- -5' |
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2617 | 3' | -50.8 | NC_001488.1 | + | 2027 | 0.75 | 0.088368 |
Target: 5'- -aGGGGGUUUGAGuugugGGCAGUCCCuuuUCCa -3' miRNA: 3'- ugUCCCCAAAUUU-----UUGUCGGGGu--GGG- -5' |
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2617 | 3' | -50.8 | NC_001488.1 | + | 2952 | 1.12 | 0.000119 |
Target: 5'- cACAGGGGUUUAAAAACAGCCCCACCCu -3' miRNA: 3'- -UGUCCCCAAAUUUUUGUCGGGGUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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