miRNA display CGI


Results 1 - 5 of 5 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2617 5' -53.1 NC_001488.1 + 495 0.71 0.12511
Target:  5'- cUAAggGGCAGCCGagCUCGACCUgAg -3'
miRNA:   3'- uGUUaaUCGUCGGCagGAGUUGGGgU- -5'
2617 5' -53.1 NC_001488.1 + 8676 0.71 0.12511
Target:  5'- cUAAggGGCAGCCGagCUCGACCUgAg -3'
miRNA:   3'- uGUUaaUCGUCGGCagGAGUUGGGgU- -5'
2617 5' -53.1 NC_001488.1 + 7732 0.71 0.116719
Target:  5'- gACAAUUAGgAGCCuUCCUCAccaagguGCCUCu -3'
miRNA:   3'- -UGUUAAUCgUCGGcAGGAGU-------UGGGGu -5'
2617 5' -53.1 NC_001488.1 + 3454 0.74 0.075712
Target:  5'- ------cGUGGCCG-CCUCAACCCCGc -3'
miRNA:   3'- uguuaauCGUCGGCaGGAGUUGGGGU- -5'
2617 5' -53.1 NC_001488.1 + 2988 0.99 0.000696
Target:  5'- aACAAUU-GCAGCCGUCCUCAACCCCAu -3'
miRNA:   3'- -UGUUAAuCGUCGGCAGGAGUUGGGGU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.