miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26174 3' -56 NC_005342.2 + 33119 0.66 0.670297
Target:  5'- uGCCUgCG-GCGcGGCGa--CUGCGCgCCg -3'
miRNA:   3'- gCGGA-GCaCGC-CCGCaaaGAUGUG-GG- -5'
26174 3' -56 NC_005342.2 + 12298 0.66 0.659373
Target:  5'- aGCCUCGcGCGGGUugacgUUC-GCAUUCa -3'
miRNA:   3'- gCGGAGCaCGCCCGca---AAGaUGUGGG- -5'
26174 3' -56 NC_005342.2 + 11683 0.66 0.648424
Target:  5'- gCGCCgggcggCGUGCuGGCGUc-CUGCGCg- -3'
miRNA:   3'- -GCGGa-----GCACGcCCGCAaaGAUGUGgg -5'
26174 3' -56 NC_005342.2 + 13065 0.66 0.626492
Target:  5'- gGaCCUCGcGCaGGCGUUg--AUGCCCg -3'
miRNA:   3'- gC-GGAGCaCGcCCGCAAagaUGUGGG- -5'
26174 3' -56 NC_005342.2 + 18172 0.67 0.615528
Target:  5'- uGCCggCGUGcCGGGUGa---UGCGCUCg -3'
miRNA:   3'- gCGGa-GCAC-GCCCGCaaagAUGUGGG- -5'
26174 3' -56 NC_005342.2 + 9609 0.67 0.593654
Target:  5'- uGCCg---GCGGcGCGc--CUGCGCCCg -3'
miRNA:   3'- gCGGagcaCGCC-CGCaaaGAUGUGGG- -5'
26174 3' -56 NC_005342.2 + 38890 0.68 0.550357
Target:  5'- cCGCC-CGUGCuGcGCGcg-CUGCACCg -3'
miRNA:   3'- -GCGGaGCACGcC-CGCaaaGAUGUGGg -5'
26174 3' -56 NC_005342.2 + 26181 0.68 0.508079
Target:  5'- uCGuCCUgCuUGCGGGCGg--CUAC-CCCg -3'
miRNA:   3'- -GC-GGA-GcACGCCCGCaaaGAUGuGGG- -5'
26174 3' -56 NC_005342.2 + 41691 0.68 0.508079
Target:  5'- uCGCCa-GUGCGGGCGa--CcGCGCCa -3'
miRNA:   3'- -GCGGagCACGCCCGCaaaGaUGUGGg -5'
26174 3' -56 NC_005342.2 + 44147 0.69 0.467236
Target:  5'- uGCCggcgCGUGCGaGGCG---CUugGCCUg -3'
miRNA:   3'- gCGGa---GCACGC-CCGCaaaGAugUGGG- -5'
26174 3' -56 NC_005342.2 + 9436 0.71 0.391068
Target:  5'- gCGCCaaGUGCGGGCGcc---GCACCg -3'
miRNA:   3'- -GCGGagCACGCCCGCaaagaUGUGGg -5'
26174 3' -56 NC_005342.2 + 22037 0.71 0.382129
Target:  5'- gGCCcgcaGUGCGGGCcguuugucGUUUCUGCGCa- -3'
miRNA:   3'- gCGGag--CACGCCCG--------CAAAGAUGUGgg -5'
26174 3' -56 NC_005342.2 + 36917 0.71 0.347761
Target:  5'- uCGCgUCGUGCGGcgugaGCGcUUCgagcACGCCCc -3'
miRNA:   3'- -GCGgAGCACGCC-----CGCaAAGa---UGUGGG- -5'
26174 3' -56 NC_005342.2 + 12425 0.72 0.32347
Target:  5'- gCGCCgggCGgggcGCGGGCGggcgCUacgGCGCCCc -3'
miRNA:   3'- -GCGGa--GCa---CGCCCGCaaa-GA---UGUGGG- -5'
26174 3' -56 NC_005342.2 + 4149 0.76 0.16926
Target:  5'- cCGCgCUCGUGCugcagcGGCGUgugcUUCUGCGCCUg -3'
miRNA:   3'- -GCG-GAGCACGc-----CCGCA----AAGAUGUGGG- -5'
26174 3' -56 NC_005342.2 + 18705 1.13 0.000436
Target:  5'- cCGCCUCGUGCGGGCGUUUCUACACCCg -3'
miRNA:   3'- -GCGGAGCACGCCCGCAAAGAUGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.