miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26174 5' -46.8 NC_005342.2 + 13080 0.66 0.991095
Target:  5'- gUCGGGcAUCUUGAUggaccuCGCGCagGCGUUGa -3'
miRNA:   3'- -AGCUUuUAGAGUUGu-----GCGCG--UGCAAC- -5'
26174 5' -46.8 NC_005342.2 + 47454 0.66 0.991095
Target:  5'- aCGAAGcgUUCAcgcucgccgGCACGuCGCGCGccgUGg -3'
miRNA:   3'- aGCUUUuaGAGU---------UGUGC-GCGUGCa--AC- -5'
26174 5' -46.8 NC_005342.2 + 30684 0.66 0.99096
Target:  5'- gUCGAcGcgCUCGACGCGUucaaccagucgauGCGCGa-- -3'
miRNA:   3'- -AGCUuUuaGAGUUGUGCG-------------CGUGCaac -5'
26174 5' -46.8 NC_005342.2 + 2262 0.66 0.990823
Target:  5'- gUCGGcAGGUCgugcgccguggcCGGCACGCcCGCGUUGa -3'
miRNA:   3'- -AGCU-UUUAGa-----------GUUGUGCGcGUGCAAC- -5'
26174 5' -46.8 NC_005342.2 + 18380 0.66 0.989667
Target:  5'- gUGAGGAUCgu-GCGCaCGCGCGUg- -3'
miRNA:   3'- aGCUUUUAGaguUGUGcGCGUGCAac -5'
26174 5' -46.8 NC_005342.2 + 16986 0.66 0.988065
Target:  5'- gUCGccGcgCUCGACuCGUGCACGcUGc -3'
miRNA:   3'- -AGCuuUuaGAGUUGuGCGCGUGCaAC- -5'
26174 5' -46.8 NC_005342.2 + 17326 0.66 0.987895
Target:  5'- gUCGAAggcAAUCUgCAGCGCGUccugcauGCGCGg-- -3'
miRNA:   3'- -AGCUU---UUAGA-GUUGUGCG-------CGUGCaac -5'
26174 5' -46.8 NC_005342.2 + 41119 0.66 0.986278
Target:  5'- gUGAAcAUCg-AGCACGCGCACa--- -3'
miRNA:   3'- aGCUUuUAGagUUGUGCGCGUGcaac -5'
26174 5' -46.8 NC_005342.2 + 20719 0.66 0.984292
Target:  5'- gCGguGAUgaCGGCGCGCGCGCu--- -3'
miRNA:   3'- aGCuuUUAgaGUUGUGCGCGUGcaac -5'
26174 5' -46.8 NC_005342.2 + 15516 0.66 0.984292
Target:  5'- cUGuuGcgCUCGGCACGCcaaGCGCGUc- -3'
miRNA:   3'- aGCuuUuaGAGUUGUGCG---CGUGCAac -5'
26174 5' -46.8 NC_005342.2 + 14283 0.66 0.984292
Target:  5'- cUCGAAAGaggC-GCGCGCGCACGc-- -3'
miRNA:   3'- -AGCUUUUagaGuUGUGCGCGUGCaac -5'
26174 5' -46.8 NC_005342.2 + 6259 0.67 0.982095
Target:  5'- uUCGAAGuUUgacgCAACgaGCGCGCugGUg- -3'
miRNA:   3'- -AGCUUUuAGa---GUUG--UGCGCGugCAac -5'
26174 5' -46.8 NC_005342.2 + 44689 0.67 0.981864
Target:  5'- aUCGAGAcgCagcucgaUCAGCugGCGCAgCGa-- -3'
miRNA:   3'- -AGCUUUuaG-------AGUUGugCGCGU-GCaac -5'
26174 5' -46.8 NC_005342.2 + 21797 0.67 0.981864
Target:  5'- gUCGAAcuUCgcugCGucgagcuGCugGCGCACGUg- -3'
miRNA:   3'- -AGCUUuuAGa---GU-------UGugCGCGUGCAac -5'
26174 5' -46.8 NC_005342.2 + 22772 0.67 0.977021
Target:  5'- -aGGAcuGcgUUCGAUGCGcCGCACGUUGc -3'
miRNA:   3'- agCUU--UuaGAGUUGUGC-GCGUGCAAC- -5'
26174 5' -46.8 NC_005342.2 + 37996 0.67 0.974119
Target:  5'- uUCGAcgAGAUCgauGCACGCGCGacCGUg- -3'
miRNA:   3'- -AGCU--UUUAGaguUGUGCGCGU--GCAac -5'
26174 5' -46.8 NC_005342.2 + 19855 0.67 0.974119
Target:  5'- aUCGca---CUCAACGCGCgGCACGa-- -3'
miRNA:   3'- -AGCuuuuaGAGUUGUGCG-CGUGCaac -5'
26174 5' -46.8 NC_005342.2 + 31427 0.67 0.974119
Target:  5'- aUCGAgcAGAUCggcCGACuguucACGCGCGCGg-- -3'
miRNA:   3'- -AGCU--UUUAGa--GUUG-----UGCGCGUGCaac -5'
26174 5' -46.8 NC_005342.2 + 20800 0.67 0.97096
Target:  5'- gCGAu-GUCcggCAGCGCGCGCGcCGUc- -3'
miRNA:   3'- aGCUuuUAGa--GUUGUGCGCGU-GCAac -5'
26174 5' -46.8 NC_005342.2 + 43870 0.68 0.967534
Target:  5'- cUCGAcGAUC-CGACgACGCGCGCc--- -3'
miRNA:   3'- -AGCUuUUAGaGUUG-UGCGCGUGcaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.