miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26174 5' -46.8 NC_005342.2 + 11160 0.72 0.845162
Target:  5'- gUUGAAAAUCcacuucucgCGACccGCGCGCACGUg- -3'
miRNA:   3'- -AGCUUUUAGa--------GUUG--UGCGCGUGCAac -5'
26174 5' -46.8 NC_005342.2 + 36843 0.68 0.955561
Target:  5'- cUCGAAGcgCUC-ACGC-CGCACGa-- -3'
miRNA:   3'- -AGCUUUuaGAGuUGUGcGCGUGCaac -5'
26174 5' -46.8 NC_005342.2 + 37996 0.67 0.974119
Target:  5'- uUCGAcgAGAUCgauGCACGCGCGacCGUg- -3'
miRNA:   3'- -AGCU--UUUAGaguUGUGCGCGU--GCAac -5'
26174 5' -46.8 NC_005342.2 + 47454 0.66 0.991095
Target:  5'- aCGAAGcgUUCAcgcucgccgGCACGuCGCGCGccgUGg -3'
miRNA:   3'- aGCUUUuaGAGU---------UGUGC-GCGUGCa--AC- -5'
26174 5' -46.8 NC_005342.2 + 4209 0.71 0.888001
Target:  5'- cUCGAGAAcaUCGGCGugaggaugcCGCGCACGUUc -3'
miRNA:   3'- -AGCUUUUagAGUUGU---------GCGCGUGCAAc -5'
26174 5' -46.8 NC_005342.2 + 19032 0.7 0.916959
Target:  5'- aUCGAuucGAUCUCGAuCAUGCGUugGc-- -3'
miRNA:   3'- -AGCUu--UUAGAGUU-GUGCGCGugCaac -5'
26174 5' -46.8 NC_005342.2 + 18739 1.09 0.006635
Target:  5'- cUCGAAAAUCUCAACACGCGCACGUUGc -3'
miRNA:   3'- -AGCUUUUAGAGUUGUGCGCGUGCAAC- -5'
26174 5' -46.8 NC_005342.2 + 28111 0.85 0.213614
Target:  5'- cCGAAAAUCUCA--ACGCGCACGUUu -3'
miRNA:   3'- aGCUUUUAGAGUugUGCGCGUGCAAc -5'
26174 5' -46.8 NC_005342.2 + 44655 0.73 0.763978
Target:  5'- cCGAAGAagUCGgcagcuauccuGCGCGCGCACGUc- -3'
miRNA:   3'- aGCUUUUagAGU-----------UGUGCGCGUGCAac -5'
26174 5' -46.8 NC_005342.2 + 12713 0.68 0.955561
Target:  5'- gCGuuAcgCUgGuACGCGCGCACGUa- -3'
miRNA:   3'- aGCuuUuaGAgU-UGUGCGCGUGCAac -5'
26174 5' -46.8 NC_005342.2 + 6860 0.69 0.946092
Target:  5'- aUCGAGcgGAUCgcggCGACAgcggcgucuuuUGCGCACGUUu -3'
miRNA:   3'- -AGCUU--UUAGa---GUUGU-----------GCGCGUGCAAc -5'
26174 5' -46.8 NC_005342.2 + 22007 0.69 0.940895
Target:  5'- gCGAA----UCAGCGCGCGgGCGUUu -3'
miRNA:   3'- aGCUUuuagAGUUGUGCGCgUGCAAc -5'
26174 5' -46.8 NC_005342.2 + 21673 0.72 0.856965
Target:  5'- cUCGAAGAUaugacggccgagcagCUCGACGCgcucuauGCGCACGUg- -3'
miRNA:   3'- -AGCUUUUA---------------GAGUUGUG-------CGCGUGCAac -5'
26174 5' -46.8 NC_005342.2 + 15772 0.69 0.946092
Target:  5'- cUCGAAgcguucGAUCgcgcCGACGCcuGCGCACGUUc -3'
miRNA:   3'- -AGCUU------UUAGa---GUUGUG--CGCGUGCAAc -5'
26174 5' -46.8 NC_005342.2 + 44625 0.71 0.863133
Target:  5'- aUCGAGcugcGUCUCGAUGCGuCGCGCGc-- -3'
miRNA:   3'- -AGCUUu---UAGAGUUGUGC-GCGUGCaac -5'
26174 5' -46.8 NC_005342.2 + 25785 0.69 0.935385
Target:  5'- gCGcgcGAUCUUAucACGCGCGCACGc-- -3'
miRNA:   3'- aGCuu-UUAGAGU--UGUGCGCGUGCaac -5'
26174 5' -46.8 NC_005342.2 + 5564 0.68 0.955561
Target:  5'- gCGGccAUCg-GGCAUGCGCACGUUc -3'
miRNA:   3'- aGCUuuUAGagUUGUGCGCGUGCAAc -5'
26174 5' -46.8 NC_005342.2 + 43870 0.68 0.967534
Target:  5'- cUCGAcGAUC-CGACgACGCGCGCc--- -3'
miRNA:   3'- -AGCUuUUAGaGUUG-UGCGCGUGcaac -5'
26174 5' -46.8 NC_005342.2 + 45216 0.71 0.888001
Target:  5'- gCGAGAucGUCUaCAACugGCGgGCGggGc -3'
miRNA:   3'- aGCUUU--UAGA-GUUGugCGCgUGCaaC- -5'
26174 5' -46.8 NC_005342.2 + 23730 0.69 0.935385
Target:  5'- gUCGGAAGUCguaacgggcagcUCGACACGCG-ACGa-- -3'
miRNA:   3'- -AGCUUUUAG------------AGUUGUGCGCgUGCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.