miRNA display CGI


Results 1 - 20 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26178 5' -57 NC_005342.2 + 9189 0.66 0.594962
Target:  5'- cGGUCGAGCAgGCaaagcgCGACGUGCg----- -3'
miRNA:   3'- -CCGGCUCGU-CGa-----GCUGCGCGagauac -5'
26178 5' -57 NC_005342.2 + 11792 0.66 0.594962
Target:  5'- cGGCCau-CAGCgcgaCGGCGCGCUCc--- -3'
miRNA:   3'- -CCGGcucGUCGa---GCUGCGCGAGauac -5'
26178 5' -57 NC_005342.2 + 47758 0.66 0.594962
Target:  5'- cGCCGAGCAGCUUGcCGaauaGCa----- -3'
miRNA:   3'- cCGGCUCGUCGAGCuGCg---CGagauac -5'
26178 5' -57 NC_005342.2 + 15921 0.66 0.594962
Target:  5'- uGGCgGucacGGCGGCUCGcucGCGgGCUCg--- -3'
miRNA:   3'- -CCGgC----UCGUCGAGC---UGCgCGAGauac -5'
26178 5' -57 NC_005342.2 + 31141 0.66 0.584026
Target:  5'- cGGCUGcGUcGCUCGGCaGCGgUCUGa- -3'
miRNA:   3'- -CCGGCuCGuCGAGCUG-CGCgAGAUac -5'
26178 5' -57 NC_005342.2 + 18574 0.66 0.584026
Target:  5'- aGGCCGcuGCAGCguccgUCGGCGUGC-Cg--- -3'
miRNA:   3'- -CCGGCu-CGUCG-----AGCUGCGCGaGauac -5'
26178 5' -57 NC_005342.2 + 11884 0.66 0.57313
Target:  5'- cGGCCcGGCAuGCgcagCGGCGCGCg----- -3'
miRNA:   3'- -CCGGcUCGU-CGa---GCUGCGCGagauac -5'
26178 5' -57 NC_005342.2 + 12448 0.66 0.57313
Target:  5'- uGGCCGAagGCGGCgacacUGGCGCGC-Cg--- -3'
miRNA:   3'- -CCGGCU--CGUCGa----GCUGCGCGaGauac -5'
26178 5' -57 NC_005342.2 + 41211 0.66 0.562283
Target:  5'- cGUCGAGCAGCgccuguUCGaucaugugcGCGUGCUCgAUGu -3'
miRNA:   3'- cCGGCUCGUCG------AGC---------UGCGCGAGaUAC- -5'
26178 5' -57 NC_005342.2 + 45826 0.66 0.562283
Target:  5'- uGGCCGAGC-GCgguGCGCGCUa---- -3'
miRNA:   3'- -CCGGCUCGuCGagcUGCGCGAgauac -5'
26178 5' -57 NC_005342.2 + 11248 0.66 0.562283
Target:  5'- aGGCCGAGUucGCgUUGcCGCGCgCUGUu -3'
miRNA:   3'- -CCGGCUCGu-CG-AGCuGCGCGaGAUAc -5'
26178 5' -57 NC_005342.2 + 9461 0.66 0.562283
Target:  5'- cGCCGAGCuGCUCGA-GC-UUCUGc- -3'
miRNA:   3'- cCGGCUCGuCGAGCUgCGcGAGAUac -5'
26178 5' -57 NC_005342.2 + 18965 0.66 0.551491
Target:  5'- cGCCacaaacaGGCGGCcuUCGAUGCGUUCUGg- -3'
miRNA:   3'- cCGGc------UCGUCG--AGCUGCGCGAGAUac -5'
26178 5' -57 NC_005342.2 + 28656 0.66 0.551491
Target:  5'- cGGCaCGAGC-GCUCGAgCGUGCa----- -3'
miRNA:   3'- -CCG-GCUCGuCGAGCU-GCGCGagauac -5'
26178 5' -57 NC_005342.2 + 44991 0.66 0.551491
Target:  5'- uGGCCGGGC--UUCGugGCGCggaacagCUGc- -3'
miRNA:   3'- -CCGGCUCGucGAGCugCGCGa------GAUac -5'
26178 5' -57 NC_005342.2 + 8265 0.66 0.548266
Target:  5'- gGGCCGGcgucauccugccacGCAGCguucaaaacgucUCGACGCcGCUCa--- -3'
miRNA:   3'- -CCGGCU--------------CGUCG------------AGCUGCG-CGAGauac -5'
26178 5' -57 NC_005342.2 + 9101 0.67 0.540764
Target:  5'- cGCCGAGCAcguaacGCaCGuCGCGCUUUGc- -3'
miRNA:   3'- cCGGCUCGU------CGaGCuGCGCGAGAUac -5'
26178 5' -57 NC_005342.2 + 465 0.67 0.534361
Target:  5'- uGCCGcGCAGCcUGucuugaucaaggaucGCGCGCUCUAc- -3'
miRNA:   3'- cCGGCuCGUCGaGC---------------UGCGCGAGAUac -5'
26178 5' -57 NC_005342.2 + 20751 0.67 0.530107
Target:  5'- cGCCGAcGCGGCU--GCGCGC-CUGa- -3'
miRNA:   3'- cCGGCU-CGUCGAgcUGCGCGaGAUac -5'
26178 5' -57 NC_005342.2 + 37924 0.67 0.530107
Target:  5'- cGGCCGGGuCGGCgUCGAaCGCGaagaacugCUGUa -3'
miRNA:   3'- -CCGGCUC-GUCG-AGCU-GCGCga------GAUAc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.