miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26181 3' -55.6 NC_005342.2 + 7256 0.66 0.697156
Target:  5'- aUCUg---CGCGaCGGCGAACGgGCg -3'
miRNA:   3'- cAGAacuaGUGCcGCCGCUUGCgCGg -5'
26181 3' -55.6 NC_005342.2 + 20637 0.66 0.686272
Target:  5'- -------cCACGGC-GCGAcccgACGCGCCg -3'
miRNA:   3'- cagaacuaGUGCCGcCGCU----UGCGCGG- -5'
26181 3' -55.6 NC_005342.2 + 29062 0.66 0.686272
Target:  5'- ----cGAUCAaaGCGGCc--CGCGCCg -3'
miRNA:   3'- cagaaCUAGUgcCGCCGcuuGCGCGG- -5'
26181 3' -55.6 NC_005342.2 + 13431 0.66 0.686272
Target:  5'- gGUCgUGcgCACcGCGucGCGAAUGCGCa -3'
miRNA:   3'- -CAGaACuaGUGcCGC--CGCUUGCGCGg -5'
26181 3' -55.6 NC_005342.2 + 20722 0.66 0.675334
Target:  5'- ---gUGAUgACGGC-GCGcGCGCuGCCg -3'
miRNA:   3'- cagaACUAgUGCCGcCGCuUGCG-CGG- -5'
26181 3' -55.6 NC_005342.2 + 25118 0.66 0.675334
Target:  5'- ----cGAgCACGGCGGCGcgcacguuCGCgGCCu -3'
miRNA:   3'- cagaaCUaGUGCCGCCGCuu------GCG-CGG- -5'
26181 3' -55.6 NC_005342.2 + 47943 0.66 0.675334
Target:  5'- uUCgacGGUCACcaugccggcGCGGUGcGCGCGCCc -3'
miRNA:   3'- cAGaa-CUAGUGc--------CGCCGCuUGCGCGG- -5'
26181 3' -55.6 NC_005342.2 + 9596 0.66 0.664357
Target:  5'- --gUUGcgCAcCGGCugccGGCG-GCGCGCCu -3'
miRNA:   3'- cagAACuaGU-GCCG----CCGCuUGCGCGG- -5'
26181 3' -55.6 NC_005342.2 + 8871 0.66 0.664357
Target:  5'- -cCUUGAUCuuGGCgagguuGGCGucGAUGCGCg -3'
miRNA:   3'- caGAACUAGugCCG------CCGC--UUGCGCGg -5'
26181 3' -55.6 NC_005342.2 + 30945 0.66 0.664357
Target:  5'- ----cGGUCGCGacggccgcGCGGCGca-GCGCCg -3'
miRNA:   3'- cagaaCUAGUGC--------CGCCGCuugCGCGG- -5'
26181 3' -55.6 NC_005342.2 + 4915 0.66 0.664357
Target:  5'- ---aUGGUCAgCGGCGGCaGcggcaucggcacGGCGCGCg -3'
miRNA:   3'- cagaACUAGU-GCCGCCG-C------------UUGCGCGg -5'
26181 3' -55.6 NC_005342.2 + 47221 0.66 0.653348
Target:  5'- ----cGcgC-CGGCGGCGAcugcCGCGCUg -3'
miRNA:   3'- cagaaCuaGuGCCGCCGCUu---GCGCGG- -5'
26181 3' -55.6 NC_005342.2 + 1141 0.66 0.653348
Target:  5'- ----cGAUCGCGGCGGCuugcuuCGgGUCu -3'
miRNA:   3'- cagaaCUAGUGCCGCCGcuu---GCgCGG- -5'
26181 3' -55.6 NC_005342.2 + 15482 0.66 0.653348
Target:  5'- ----cGGUCAcCGGCGGCGcgucaaGCGCg -3'
miRNA:   3'- cagaaCUAGU-GCCGCCGCuug---CGCGg -5'
26181 3' -55.6 NC_005342.2 + 38764 0.66 0.653348
Target:  5'- uUCgUUGAgC-CGGaCGGCGAguACGCGCg -3'
miRNA:   3'- cAG-AACUaGuGCC-GCCGCU--UGCGCGg -5'
26181 3' -55.6 NC_005342.2 + 41178 0.66 0.64232
Target:  5'- cGUCgUGAUcCAUGGCGaGCucgagaagucgGAGCGCGUg -3'
miRNA:   3'- -CAGaACUA-GUGCCGC-CG-----------CUUGCGCGg -5'
26181 3' -55.6 NC_005342.2 + 43785 0.66 0.64232
Target:  5'- uGUCaaugugUGGUCACGGCGuGCa---GUGCCc -3'
miRNA:   3'- -CAGa-----ACUAGUGCCGC-CGcuugCGCGG- -5'
26181 3' -55.6 NC_005342.2 + 3276 0.66 0.64232
Target:  5'- -cCUUGugcgCGCGGCGGCGcGCG-GUUg -3'
miRNA:   3'- caGAACua--GUGCCGCCGCuUGCgCGG- -5'
26181 3' -55.6 NC_005342.2 + 4619 0.66 0.64232
Target:  5'- aUCgcGAUCAUGGCgacgggcaGGCcGGCGCGCg -3'
miRNA:   3'- cAGaaCUAGUGCCG--------CCGcUUGCGCGg -5'
26181 3' -55.6 NC_005342.2 + 6613 0.66 0.64232
Target:  5'- -aCUcGAUCGCGcuCGGC-AGCGCGCUc -3'
miRNA:   3'- caGAaCUAGUGCc-GCCGcUUGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.