miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26187 3' -54.7 NC_005342.2 + 9142 0.66 0.666233
Target:  5'- gCAGCUGCGCGcuugcguucguucgcGACGGCagugucgaucGCggUGCgCACc -3'
miRNA:   3'- aGUCGACGCGU---------------UUGUCG----------CGa-ACG-GUG- -5'
26187 3' -54.7 NC_005342.2 + 35793 0.66 0.66168
Target:  5'- -gAGCUGgccCGUGAcGCGGCGCUgcgcgccaGCCACg -3'
miRNA:   3'- agUCGAC---GCGUU-UGUCGCGAa-------CGGUG- -5'
26187 3' -54.7 NC_005342.2 + 46973 0.66 0.66168
Target:  5'- -gAGCggGCGCAGGCAuUGCUcGCCGu -3'
miRNA:   3'- agUCGa-CGCGUUUGUcGCGAaCGGUg -5'
26187 3' -54.7 NC_005342.2 + 23551 0.66 0.66168
Target:  5'- gUAGCUGuCGCGAACgcauugucgaaAGCGaa-GCCGCc -3'
miRNA:   3'- aGUCGAC-GCGUUUG-----------UCGCgaaCGGUG- -5'
26187 3' -54.7 NC_005342.2 + 39084 0.66 0.654842
Target:  5'- aUCGGCUGCcagccccgggugaGCAGccaaccugcgaucGCGGCGCgugcgccugccgGCCGCu -3'
miRNA:   3'- -AGUCGACG-------------CGUU-------------UGUCGCGaa----------CGGUG- -5'
26187 3' -54.7 NC_005342.2 + 11886 0.66 0.654842
Target:  5'- -aAGCgauguaccgGCGCAAGCuggagcgcgccgucGCGCUgaugGCCGCg -3'
miRNA:   3'- agUCGa--------CGCGUUUGu-------------CGCGAa---CGGUG- -5'
26187 3' -54.7 NC_005342.2 + 4816 0.66 0.650279
Target:  5'- gUCGGCUGacCGUAcGCGcGCGCcgUGCCGa -3'
miRNA:   3'- -AGUCGAC--GCGUuUGU-CGCGa-ACGGUg -5'
26187 3' -54.7 NC_005342.2 + 47309 0.66 0.650279
Target:  5'- cCGGCcgGCGCcucguuCAGCGCggcagucGCCGCc -3'
miRNA:   3'- aGUCGa-CGCGuuu---GUCGCGaa-----CGGUG- -5'
26187 3' -54.7 NC_005342.2 + 15624 0.66 0.649137
Target:  5'- gCAGCgUGCGaccgugauCGAGCAGCuuaaggaGCUcGCCACg -3'
miRNA:   3'- aGUCG-ACGC--------GUUUGUCG-------CGAaCGGUG- -5'
26187 3' -54.7 NC_005342.2 + 42984 0.66 0.638859
Target:  5'- aCGGggGCGCAAGgGGCGCcgaucccgGCCGg -3'
miRNA:   3'- aGUCgaCGCGUUUgUCGCGaa------CGGUg -5'
26187 3' -54.7 NC_005342.2 + 2998 0.66 0.638859
Target:  5'- gUAGC-GCGCGAacuucagaucguACGGCaGCUgGCCGCc -3'
miRNA:   3'- aGUCGaCGCGUU------------UGUCG-CGAaCGGUG- -5'
26187 3' -54.7 NC_005342.2 + 38250 0.66 0.638859
Target:  5'- gCGGCaGCGCAAuCAuCGCgucgcGCCACg -3'
miRNA:   3'- aGUCGaCGCGUUuGUcGCGaa---CGGUG- -5'
26187 3' -54.7 NC_005342.2 + 30195 0.66 0.637717
Target:  5'- aCGGC-GCGCGAAuucggucCGGCGCcgGUCGCu -3'
miRNA:   3'- aGUCGaCGCGUUU-------GUCGCGaaCGGUG- -5'
26187 3' -54.7 NC_005342.2 + 47355 0.66 0.635432
Target:  5'- uUCAGCUGCGCGucgccgagaugggcGGCAcguucgauccGCGCgaGCaCAUg -3'
miRNA:   3'- -AGUCGACGCGU--------------UUGU----------CGCGaaCG-GUG- -5'
26187 3' -54.7 NC_005342.2 + 11340 0.66 0.627434
Target:  5'- -aGGCgacgGCGCAguucAACAGCGCgcgGCaACg -3'
miRNA:   3'- agUCGa---CGCGU----UUGUCGCGaa-CGgUG- -5'
26187 3' -54.7 NC_005342.2 + 12266 0.66 0.627434
Target:  5'- cCGGCggcGCGCAuuGCGGCGUccUGCgCGCc -3'
miRNA:   3'- aGUCGa--CGCGUu-UGUCGCGa-ACG-GUG- -5'
26187 3' -54.7 NC_005342.2 + 38674 0.66 0.616012
Target:  5'- aUCAGC-GCG-AAGCGGCGCgggUGCgCGg -3'
miRNA:   3'- -AGUCGaCGCgUUUGUCGCGa--ACG-GUg -5'
26187 3' -54.7 NC_005342.2 + 39658 0.66 0.616012
Target:  5'- uUCGGUUGCgGCAcguACGGCGCc-GUCAUg -3'
miRNA:   3'- -AGUCGACG-CGUu--UGUCGCGaaCGGUG- -5'
26187 3' -54.7 NC_005342.2 + 11306 0.66 0.612588
Target:  5'- --cGC-GCGCGAugaagGCGGCGCgguucgucgucaccUUGCCGCg -3'
miRNA:   3'- aguCGaCGCGUU-----UGUCGCG--------------AACGGUG- -5'
26187 3' -54.7 NC_005342.2 + 41806 0.67 0.609166
Target:  5'- gUCGuGCUGCGCGAcgaggcgugucgcgaGguGCGCcagUUGCCGg -3'
miRNA:   3'- -AGU-CGACGCGUU---------------UguCGCG---AACGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.