miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26187 5' -56.8 NC_005342.2 + 14264 0.66 0.564385
Target:  5'- -cACGCCgUCGCauggGUcuggucgaacaaUUGCGucauGCUGCCg -3'
miRNA:   3'- uuUGCGG-AGCGa---CG------------AACGCu---CGACGG- -5'
26187 5' -56.8 NC_005342.2 + 21100 0.66 0.564385
Target:  5'- cGAACGCCgUCGgucugaUGUUcGCGAGC-GCCc -3'
miRNA:   3'- -UUUGCGG-AGCg-----ACGAaCGCUCGaCGG- -5'
26187 5' -56.8 NC_005342.2 + 41821 0.66 0.564385
Target:  5'- gAGGCGUgUCGCgaggUGCGccAGUUGCCg -3'
miRNA:   3'- -UUUGCGgAGCGacgaACGC--UCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 25080 0.66 0.564385
Target:  5'- cGGCGCaCUCGUUGCgaucagcgUGaCGGGCgGCg -3'
miRNA:   3'- uUUGCG-GAGCGACGa-------AC-GCUCGaCGg -5'
26187 5' -56.8 NC_005342.2 + 17311 0.66 0.553373
Target:  5'- cAGCGCgUC-CUGCaugcGCGGGCagGCCg -3'
miRNA:   3'- uUUGCGgAGcGACGaa--CGCUCGa-CGG- -5'
26187 5' -56.8 NC_005342.2 + 3696 0.66 0.546797
Target:  5'- uGAGCGCCUCGC-GCaccccCGGGCggaucaaugcauaggUGCCg -3'
miRNA:   3'- -UUUGCGGAGCGaCGaac--GCUCG---------------ACGG- -5'
26187 5' -56.8 NC_005342.2 + 32129 0.66 0.542426
Target:  5'- -cGCGCCUCGCgcaGCUcgcUGaCGAG-UGUCu -3'
miRNA:   3'- uuUGCGGAGCGa--CGA---AC-GCUCgACGG- -5'
26187 5' -56.8 NC_005342.2 + 4611 0.66 0.542426
Target:  5'- uGAGCGCCaUCGCgaucaugGCga-CGGGCagGCCg -3'
miRNA:   3'- -UUUGCGG-AGCGa------CGaacGCUCGa-CGG- -5'
26187 5' -56.8 NC_005342.2 + 23058 0.66 0.541336
Target:  5'- --cCGCUUC-CUGCUcucgGCGAccgguaccgcgacGCUGCCg -3'
miRNA:   3'- uuuGCGGAGcGACGAa---CGCU-------------CGACGG- -5'
26187 5' -56.8 NC_005342.2 + 19955 0.66 0.531552
Target:  5'- gGAugGCCcagaGCUGCUgagcGCGGGCguaaucgGUCg -3'
miRNA:   3'- -UUugCGGag--CGACGAa---CGCUCGa------CGG- -5'
26187 5' -56.8 NC_005342.2 + 9569 0.66 0.531552
Target:  5'- cAGCGCCagccggCGCgGCaucggccggUUGCGcaccGGCUGCCg -3'
miRNA:   3'- uUUGCGGa-----GCGaCG---------AACGC----UCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 47711 0.66 0.520757
Target:  5'- ---aGCCcCGCcgaUGCgaaUGCGAagGCUGCCa -3'
miRNA:   3'- uuugCGGaGCG---ACGa--ACGCU--CGACGG- -5'
26187 5' -56.8 NC_005342.2 + 18413 0.66 0.516464
Target:  5'- cAACGCCUCGCgaucgGCggcgucgacaccGCGAGC-GCg -3'
miRNA:   3'- uUUGCGGAGCGa----CGaa----------CGCUCGaCGg -5'
26187 5' -56.8 NC_005342.2 + 28478 0.67 0.499435
Target:  5'- cGAGCGCCgcgucgaccgCGCgggucGCggcgGCGcGGCUGCCc -3'
miRNA:   3'- -UUUGCGGa---------GCGa----CGaa--CGC-UCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 3951 0.67 0.48892
Target:  5'- cAGCGUCUCGaUGUUggcgGCGuuuAGCUGCUg -3'
miRNA:   3'- uUUGCGGAGCgACGAa---CGC---UCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 39506 0.67 0.473346
Target:  5'- cGACGCCgcucgCGCUGUggccguccgaacGCGcauacccGGCUGCCg -3'
miRNA:   3'- uUUGCGGa----GCGACGaa----------CGC-------UCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 12276 0.67 0.468209
Target:  5'- gAAGCGCCcUGCagGUgaUUGgGGGUUGCCg -3'
miRNA:   3'- -UUUGCGGaGCGa-CG--AACgCUCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 2723 0.67 0.468209
Target:  5'- --cCGCCggCGCgacGC-UGCaGGCUGCCg -3'
miRNA:   3'- uuuGCGGa-GCGa--CGaACGcUCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 20725 0.67 0.468209
Target:  5'- -uGCGCCUC-CUGCcacugGCGcAGC-GCCg -3'
miRNA:   3'- uuUGCGGAGcGACGaa---CGC-UCGaCGG- -5'
26187 5' -56.8 NC_005342.2 + 36952 0.67 0.458024
Target:  5'- cGGCGUgUCGCcGCgcUGCGGGaUGCCg -3'
miRNA:   3'- uUUGCGgAGCGaCGa-ACGCUCgACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.