miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26187 5' -56.8 NC_005342.2 + 25604 1.08 0.000517
Target:  5'- uAAACGCCUCGCUGCUUGCGAGCUGCCc -3'
miRNA:   3'- -UUUGCGGAGCGACGAACGCUCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 9385 0.78 0.088289
Target:  5'- --uUGuCCUCGCUGCccUGCGGGCUGCg -3'
miRNA:   3'- uuuGC-GGAGCGACGa-ACGCUCGACGg -5'
26187 5' -56.8 NC_005342.2 + 13706 0.76 0.132093
Target:  5'- -uACGCUcgUGCUGCUcGCGcAGCUGCCc -3'
miRNA:   3'- uuUGCGGa-GCGACGAaCGC-UCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 9053 0.76 0.132093
Target:  5'- uGAGCGCCUCGCgguaaaucugGCUUGC--GCUGUCa -3'
miRNA:   3'- -UUUGCGGAGCGa---------CGAACGcuCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 30703 0.75 0.147903
Target:  5'- ---aGCCcUGCUGC-UGCGGGCUGCUc -3'
miRNA:   3'- uuugCGGaGCGACGaACGCUCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 30812 0.73 0.200576
Target:  5'- cGGCGCCUgGCccgucaGCggcGCGAGCUGCUg -3'
miRNA:   3'- uUUGCGGAgCGa-----CGaa-CGCUCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 9221 0.73 0.206099
Target:  5'- gGGGCGCCUCGCcGCgUGCG-GCauaGCCu -3'
miRNA:   3'- -UUUGCGGAGCGaCGaACGCuCGa--CGG- -5'
26187 5' -56.8 NC_005342.2 + 23077 0.73 0.211754
Target:  5'- --uUGCCUUGCUGC-UGC-AGCUGCa -3'
miRNA:   3'- uuuGCGGAGCGACGaACGcUCGACGg -5'
26187 5' -56.8 NC_005342.2 + 23820 0.73 0.217542
Target:  5'- aGAACGaCUCGUcGCgUGuCGAGCUGCCc -3'
miRNA:   3'- -UUUGCgGAGCGaCGaAC-GCUCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 45617 0.72 0.229523
Target:  5'- gAGGCGCugCUCGaggUGCUUGcCGAGCUGgCCg -3'
miRNA:   3'- -UUUGCG--GAGCg--ACGAAC-GCUCGAC-GG- -5'
26187 5' -56.8 NC_005342.2 + 9496 0.72 0.248536
Target:  5'- -uGCGCCUgCGCguuuUGCUcGaCGAGCUGCUu -3'
miRNA:   3'- uuUGCGGA-GCG----ACGAaC-GCUCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 9002 0.72 0.248536
Target:  5'- cGGCGCgCUCGCUGCcuuugGCGAcCUGCg -3'
miRNA:   3'- uUUGCG-GAGCGACGaa---CGCUcGACGg -5'
26187 5' -56.8 NC_005342.2 + 46613 0.71 0.261922
Target:  5'- cGAGCGCCUgcuguucaUGCUGCagcgccGCGAGC-GCCg -3'
miRNA:   3'- -UUUGCGGA--------GCGACGaa----CGCUCGaCGG- -5'
26187 5' -56.8 NC_005342.2 + 42454 0.71 0.268832
Target:  5'- gAGACGaUCggCGCUGU-UGCGGGCUGCUc -3'
miRNA:   3'- -UUUGC-GGa-GCGACGaACGCUCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 34754 0.71 0.283092
Target:  5'- cGGCGUgacgCGCUGUccUGCGGGUUGCCa -3'
miRNA:   3'- uUUGCGga--GCGACGa-ACGCUCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 45746 0.7 0.296432
Target:  5'- -cACGCCUCGCcgcgacacauccGCUcGaCGAGCUGCUu -3'
miRNA:   3'- uuUGCGGAGCGa-----------CGAaC-GCUCGACGG- -5'
26187 5' -56.8 NC_005342.2 + 46708 0.7 0.297944
Target:  5'- cGAUGCUUCGCggcGCUcGCGGcGCUGCa -3'
miRNA:   3'- uUUGCGGAGCGa--CGAaCGCU-CGACGg -5'
26187 5' -56.8 NC_005342.2 + 25641 0.7 0.297944
Target:  5'- cGugGCaagCGCUGUUUGCGcAGCUgaucGCCa -3'
miRNA:   3'- uUugCGga-GCGACGAACGC-UCGA----CGG- -5'
26187 5' -56.8 NC_005342.2 + 26195 0.7 0.321342
Target:  5'- -cACGCacacggagCUCGUccUGCUUGCGGGCgGCUa -3'
miRNA:   3'- uuUGCG--------GAGCG--ACGAACGCUCGaCGG- -5'
26187 5' -56.8 NC_005342.2 + 25699 0.7 0.329442
Target:  5'- uGAACGCC-CGCgagaaugGCUUGCucGCcgGCCa -3'
miRNA:   3'- -UUUGCGGaGCGa------CGAACGcuCGa-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.