miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26190 3' -55.4 NC_005342.2 + 35413 0.66 0.687682
Target:  5'- aGUCGCGaaCGCGagugUCGGCucAGGCACa- -3'
miRNA:   3'- aCAGCGCa-GCGCg---AGCCG--UUUGUGac -5'
26190 3' -55.4 NC_005342.2 + 2661 0.66 0.687682
Target:  5'- ---aGCGUCGCGCcggCGGCGgccGACAg-- -3'
miRNA:   3'- acagCGCAGCGCGa--GCCGU---UUGUgac -5'
26190 3' -55.4 NC_005342.2 + 45461 0.66 0.676666
Target:  5'- -aUCGCG-CGCccGCUCGGUAggUGCa- -3'
miRNA:   3'- acAGCGCaGCG--CGAGCCGUuuGUGac -5'
26190 3' -55.4 NC_005342.2 + 34731 0.66 0.676666
Target:  5'- uUGcCG-GUCGCGCcgaacaccaUCGGCGugacGCGCUGu -3'
miRNA:   3'- -ACaGCgCAGCGCG---------AGCCGUu---UGUGAC- -5'
26190 3' -55.4 NC_005342.2 + 1268 0.66 0.676666
Target:  5'- cGUUGCGUuaCGCGaUCGGCGugaauuGCAgCUGa -3'
miRNA:   3'- aCAGCGCA--GCGCgAGCCGUu-----UGU-GAC- -5'
26190 3' -55.4 NC_005342.2 + 14385 0.66 0.673352
Target:  5'- cGcCGUGUCGCGCgUCuacaucgaagaagcGGCGAacggcgccGCGCUGa -3'
miRNA:   3'- aCaGCGCAGCGCG-AG--------------CCGUU--------UGUGAC- -5'
26190 3' -55.4 NC_005342.2 + 27480 0.66 0.665606
Target:  5'- cGUCGC--CGCGCaggguuaCGGCAAACAUg- -3'
miRNA:   3'- aCAGCGcaGCGCGa------GCCGUUUGUGac -5'
26190 3' -55.4 NC_005342.2 + 46593 0.66 0.665606
Target:  5'- -uUCGUGUUGCGCaCGGUAuagacGGCACg- -3'
miRNA:   3'- acAGCGCAGCGCGaGCCGU-----UUGUGac -5'
26190 3' -55.4 NC_005342.2 + 25948 0.66 0.665606
Target:  5'- cGgCGCuUgGCGCUCGcGCAccaAGCGCUGc -3'
miRNA:   3'- aCaGCGcAgCGCGAGC-CGU---UUGUGAC- -5'
26190 3' -55.4 NC_005342.2 + 17176 0.66 0.654514
Target:  5'- -cUCGCGcaugCGCugcuGCUCGGCGGugACg- -3'
miRNA:   3'- acAGCGCa---GCG----CGAGCCGUUugUGac -5'
26190 3' -55.4 NC_005342.2 + 32669 0.66 0.654514
Target:  5'- cGUgCGCGUCGgGCagcuuugcgacuUCGGCAuagUGCUGg -3'
miRNA:   3'- aCA-GCGCAGCgCG------------AGCCGUuu-GUGAC- -5'
26190 3' -55.4 NC_005342.2 + 30340 0.66 0.654514
Target:  5'- gGUCGUGcagcaGCGCggcaaggcgCGGCGuGCGCUGc -3'
miRNA:   3'- aCAGCGCag---CGCGa--------GCCGUuUGUGAC- -5'
26190 3' -55.4 NC_005342.2 + 2696 0.66 0.654514
Target:  5'- gUGUCGcCGcCGauaCGC-CGGCGAGCGCg- -3'
miRNA:   3'- -ACAGC-GCaGC---GCGaGCCGUUUGUGac -5'
26190 3' -55.4 NC_005342.2 + 44528 0.66 0.643401
Target:  5'- cGcCGCGa--CGCUCGGCGaggacauggacGACGCUGg -3'
miRNA:   3'- aCaGCGCagcGCGAGCCGU-----------UUGUGAC- -5'
26190 3' -55.4 NC_005342.2 + 19483 0.66 0.632278
Target:  5'- cGUCGCGgguaGCGCggcguaGGCAuAGCGCa- -3'
miRNA:   3'- aCAGCGCag--CGCGag----CCGU-UUGUGac -5'
26190 3' -55.4 NC_005342.2 + 37610 0.66 0.632278
Target:  5'- cUGcUCGCGauUCGCGCucUCGGC-GACGCc- -3'
miRNA:   3'- -AC-AGCGC--AGCGCG--AGCCGuUUGUGac -5'
26190 3' -55.4 NC_005342.2 + 18918 0.66 0.632278
Target:  5'- --aUGCGUUGCGCaCGGCAAcuGCguACUGc -3'
miRNA:   3'- acaGCGCAGCGCGaGCCGUU--UG--UGAC- -5'
26190 3' -55.4 NC_005342.2 + 38261 0.66 0.632278
Target:  5'- cGUC-CGaCGCGCUCacGGCAacGACACa- -3'
miRNA:   3'- aCAGcGCaGCGCGAG--CCGU--UUGUGac -5'
26190 3' -55.4 NC_005342.2 + 1084 0.67 0.617819
Target:  5'- cGUCGCaGUCGCGCgcgaagUCGGUgccgugcugcgcgcGAcguuGCACUGc -3'
miRNA:   3'- aCAGCG-CAGCGCG------AGCCG--------------UU----UGUGAC- -5'
26190 3' -55.4 NC_005342.2 + 15434 0.67 0.610041
Target:  5'- gGUCGauCGaCGCGCUUGGCGugccgAGCGCa- -3'
miRNA:   3'- aCAGC--GCaGCGCGAGCCGU-----UUGUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.