miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26191 3' -56.8 NC_005342.2 + 24766 0.66 0.588528
Target:  5'- ---cGcUGUCGcGCGCGCGgAUCGGCa- -3'
miRNA:   3'- cauaCcACAGC-CGCGCGC-UAGUCGgu -5'
26191 3' -56.8 NC_005342.2 + 33197 0.66 0.588528
Target:  5'- ---cGGU-UCGGCGCGCaGUC-GCCGc -3'
miRNA:   3'- cauaCCAcAGCCGCGCGcUAGuCGGU- -5'
26191 3' -56.8 NC_005342.2 + 654 0.66 0.588528
Target:  5'- -aGUGcccGUGcUCGGUgaGCGCGAUCGuGCCGc -3'
miRNA:   3'- caUAC---CAC-AGCCG--CGCGCUAGU-CGGU- -5'
26191 3' -56.8 NC_005342.2 + 29947 0.66 0.577545
Target:  5'- --uUGGUGcccUCGGCGUacaacacgaaagGCGG-CGGCCAa -3'
miRNA:   3'- cauACCAC---AGCCGCG------------CGCUaGUCGGU- -5'
26191 3' -56.8 NC_005342.2 + 8838 0.67 0.523474
Target:  5'- ---aGGUaucgCGGCugcgGCGCGGUUAGCCGc -3'
miRNA:   3'- cauaCCAca--GCCG----CGCGCUAGUCGGU- -5'
26191 3' -56.8 NC_005342.2 + 20586 0.67 0.512879
Target:  5'- -cGUGGUGUUucugcaGGCGCG-GcUCGGCCu -3'
miRNA:   3'- caUACCACAG------CCGCGCgCuAGUCGGu -5'
26191 3' -56.8 NC_005342.2 + 32118 0.67 0.512879
Target:  5'- ---cGGUGUCGGCcCGCGccucgcgCAGCUc -3'
miRNA:   3'- cauaCCACAGCCGcGCGCua-----GUCGGu -5'
26191 3' -56.8 NC_005342.2 + 11793 0.67 0.491966
Target:  5'- ---aGGUgaacGUCGGUGC-CGGUCGGCUg -3'
miRNA:   3'- cauaCCA----CAGCCGCGcGCUAGUCGGu -5'
26191 3' -56.8 NC_005342.2 + 15048 0.67 0.481656
Target:  5'- ---cGGcGUCGGCGUcgGCGGUCcGCUAa -3'
miRNA:   3'- cauaCCaCAGCCGCG--CGCUAGuCGGU- -5'
26191 3' -56.8 NC_005342.2 + 20986 0.67 0.481656
Target:  5'- aGUG-GGUGcguuUCGaGCGCGUGG-CAGCCGu -3'
miRNA:   3'- -CAUaCCAC----AGC-CGCGCGCUaGUCGGU- -5'
26191 3' -56.8 NC_005342.2 + 2698 0.68 0.475522
Target:  5'- ---cGGUGUcgccgccgauacgcCGGCgagcgcgaugaaccGCGCGGUCGGCCu -3'
miRNA:   3'- cauaCCACA--------------GCCG--------------CGCGCUAGUCGGu -5'
26191 3' -56.8 NC_005342.2 + 3528 0.68 0.471454
Target:  5'- ---cGGUGcCGcGCaGCGCG-UCGGCCGa -3'
miRNA:   3'- cauaCCACaGC-CG-CGCGCuAGUCGGU- -5'
26191 3' -56.8 NC_005342.2 + 4892 0.68 0.461361
Target:  5'- ---cGGca-CGGCGCGCGcguacgGUCAGCCGa -3'
miRNA:   3'- cauaCCacaGCCGCGCGC------UAGUCGGU- -5'
26191 3' -56.8 NC_005342.2 + 9320 0.68 0.461361
Target:  5'- cGUGUucGUcGUCGGCGCGCGGcgUCGGgCCu -3'
miRNA:   3'- -CAUAc-CA-CAGCCGCGCGCU--AGUC-GGu -5'
26191 3' -56.8 NC_005342.2 + 15251 0.68 0.441527
Target:  5'- -cGUGcUG-CGGCgGCGCGGUCAGCa- -3'
miRNA:   3'- caUACcACaGCCG-CGCGCUAGUCGgu -5'
26191 3' -56.8 NC_005342.2 + 47551 0.69 0.422184
Target:  5'- ---gGGUGUacgaggccaCGGCGCGCGA-CGuGCCGg -3'
miRNA:   3'- cauaCCACA---------GCCGCGCGCUaGU-CGGU- -5'
26191 3' -56.8 NC_005342.2 + 41715 0.69 0.412706
Target:  5'- ---aGGcuuccUGUCGGUGCGCGugaagcgcgCGGCCAa -3'
miRNA:   3'- cauaCC-----ACAGCCGCGCGCua-------GUCGGU- -5'
26191 3' -56.8 NC_005342.2 + 29590 0.69 0.40336
Target:  5'- ---cGGUagucGUCGGCgaagcgcuGCGCGAUCGGgCCAc -3'
miRNA:   3'- cauaCCA----CAGCCG--------CGCGCUAGUC-GGU- -5'
26191 3' -56.8 NC_005342.2 + 45404 0.69 0.394149
Target:  5'- ---------gGGCGCGCGAUCAGCUAc -3'
miRNA:   3'- cauaccacagCCGCGCGCUAGUCGGU- -5'
26191 3' -56.8 NC_005342.2 + 32515 0.7 0.367349
Target:  5'- ---gGGaUGUCGaGCGguuCGCGAUCAGUCAg -3'
miRNA:   3'- cauaCC-ACAGC-CGC---GCGCUAGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.