miRNA display CGI


Results 1 - 20 of 29 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26191 5' -59.8 NC_005342.2 + 5018 0.66 0.42402
Target:  5'- aGGCGGCcGGCUGUugGCcgacgUCGgCGCGGc- -3'
miRNA:   3'- -CCGCCGuCUGGCA--CGa----AGC-GCGCCau -5'
26191 5' -59.8 NC_005342.2 + 30122 0.66 0.42402
Target:  5'- cGGCGcCGGACCGaa-UUCGCGCGccGUAg -3'
miRNA:   3'- -CCGCcGUCUGGCacgAAGCGCGC--CAU- -5'
26191 5' -59.8 NC_005342.2 + 44389 0.66 0.418433
Target:  5'- cGGCGGCAGcggcACgGUGCucUcccacacgccgaccaUCGCGuCGGUGu -3'
miRNA:   3'- -CCGCCGUC----UGgCACG--A---------------AGCGC-GCCAU- -5'
26191 5' -59.8 NC_005342.2 + 9967 0.66 0.414733
Target:  5'- cGCGGC-GACC-UGC-UCGUGUGGg- -3'
miRNA:   3'- cCGCCGuCUGGcACGaAGCGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 38983 0.67 0.387636
Target:  5'- gGGaUGcGCGGGCCGUGCUgccggugcagCGCGCGc-- -3'
miRNA:   3'- -CC-GC-CGUCUGGCACGAa---------GCGCGCcau -5'
26191 5' -59.8 NC_005342.2 + 2860 0.67 0.373668
Target:  5'- cGGCGGCgAGGCugauguuggcagagaCGUGCU--GCGCGGc- -3'
miRNA:   3'- -CCGCCG-UCUG---------------GCACGAagCGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 8941 0.67 0.361729
Target:  5'- cGCgGGCuGGAUCGUGCggccgUGCGCGGc- -3'
miRNA:   3'- cCG-CCG-UCUGGCACGaa---GCGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 45012 0.67 0.360887
Target:  5'- aGGuCGGCAccgacaagcacguGGCCGgGCUUCgugGCGCGGa- -3'
miRNA:   3'- -CC-GCCGU-------------CUGGCaCGAAG---CGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 29753 0.67 0.360887
Target:  5'- uGGCGGCAGcgcgGCCGcGCUcggcacgcgcuucUCGCGCa--- -3'
miRNA:   3'- -CCGCCGUC----UGGCaCGA-------------AGCGCGccau -5'
26191 5' -59.8 NC_005342.2 + 29767 0.67 0.353365
Target:  5'- uGCuGGUcGACCGUGCcaaaGCGCGGa- -3'
miRNA:   3'- cCG-CCGuCUGGCACGaag-CGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 18804 0.67 0.351709
Target:  5'- cGCGGCcgcaGGGCgCGUGCUgcuaucgaagccCGCGCGGc- -3'
miRNA:   3'- cCGCCG----UCUG-GCACGAa-----------GCGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 24261 0.68 0.337051
Target:  5'- aGGCGGcCGGuACCGUcGCaUUCGCGCu--- -3'
miRNA:   3'- -CCGCC-GUC-UGGCA-CG-AAGCGCGccau -5'
26191 5' -59.8 NC_005342.2 + 23690 0.68 0.337051
Target:  5'- uGGcCGGCGGAaaaCCGaGCgauuggcUCGCGCGGg- -3'
miRNA:   3'- -CC-GCCGUCU---GGCaCGa------AGCGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 5532 0.68 0.329103
Target:  5'- uGGCGcgaguGCAGACCGUucaGCUcgaUUGUGCGGc- -3'
miRNA:   3'- -CCGC-----CGUCUGGCA---CGA---AGCGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 4907 0.68 0.329103
Target:  5'- cGGCGGCAGcggcAUCG-GCacggCGCGCGcGUAc -3'
miRNA:   3'- -CCGCCGUC----UGGCaCGaa--GCGCGC-CAU- -5'
26191 5' -59.8 NC_005342.2 + 17295 0.68 0.329103
Target:  5'- cGCgGGCAGGCCG-GCUUUGCcuugcaguaGCGGc- -3'
miRNA:   3'- cCG-CCGUCUGGCaCGAAGCG---------CGCCau -5'
26191 5' -59.8 NC_005342.2 + 13941 0.68 0.313623
Target:  5'- cGGCcgccgcGCAGcCCGUGCcggccgacUUCGCGCGGc- -3'
miRNA:   3'- -CCGc-----CGUCuGGCACG--------AAGCGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 3287 0.68 0.311349
Target:  5'- cGGCGGCGcGCgGUugaauuaaacuaucGCUUCGCGCGa-- -3'
miRNA:   3'- -CCGCCGUcUGgCA--------------CGAAGCGCGCcau -5'
26191 5' -59.8 NC_005342.2 + 22175 0.69 0.298701
Target:  5'- cGGCGGCAG-CCGgcgGCgguUCG-GCGGc- -3'
miRNA:   3'- -CCGCCGUCuGGCa--CGa--AGCgCGCCau -5'
26191 5' -59.8 NC_005342.2 + 16726 0.69 0.291449
Target:  5'- uGCGGCGGugCuuccGCacCGCGCGGUGc -3'
miRNA:   3'- cCGCCGUCugGca--CGaaGCGCGCCAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.