miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26191 5' -59.8 NC_005342.2 + 5532 0.68 0.329103
Target:  5'- uGGCGcgaguGCAGACCGUucaGCUcgaUUGUGCGGc- -3'
miRNA:   3'- -CCGC-----CGUCUGGCA---CGA---AGCGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 27194 1.08 0.000363
Target:  5'- uGGCGGCAGACCGUGCUUCGCGCGGUAc -3'
miRNA:   3'- -CCGCCGUCUGGCACGAAGCGCGCCAU- -5'
26191 5' -59.8 NC_005342.2 + 13601 0.77 0.076073
Target:  5'- cGGCGaGCAcuUCGUGCaUCGCGCGGUAc -3'
miRNA:   3'- -CCGC-CGUcuGGCACGaAGCGCGCCAU- -5'
26191 5' -59.8 NC_005342.2 + 1822 0.76 0.092642
Target:  5'- aGCGuGCAGGCCG-GCgUCGUGCGGUu -3'
miRNA:   3'- cCGC-CGUCUGGCaCGaAGCGCGCCAu -5'
26191 5' -59.8 NC_005342.2 + 3903 0.71 0.220628
Target:  5'- cGGCGGCAGGCCGaccgGCaggUUgGCGCcguucugcaGGUAg -3'
miRNA:   3'- -CCGCCGUCUGGCa---CG---AAgCGCG---------CCAU- -5'
26191 5' -59.8 NC_005342.2 + 41347 0.7 0.238352
Target:  5'- uGGCGGCAGAUUGU-Cgg-GCGCGGg- -3'
miRNA:   3'- -CCGCCGUCUGGCAcGaagCGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 22047 0.7 0.24452
Target:  5'- gGGCGGaCAGAUCGUGCacgGCGCGu-- -3'
miRNA:   3'- -CCGCC-GUCUGGCACGaagCGCGCcau -5'
26191 5' -59.8 NC_005342.2 + 4629 0.69 0.263818
Target:  5'- uGGCgacgGGCAGGCCGg----CGCGCGGg- -3'
miRNA:   3'- -CCG----CCGUCUGGCacgaaGCGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 22175 0.69 0.298701
Target:  5'- cGGCGGCAG-CCGgcgGCgguUCG-GCGGc- -3'
miRNA:   3'- -CCGCCGUCuGGCa--CGa--AGCgCGCCau -5'
26191 5' -59.8 NC_005342.2 + 30122 0.66 0.42402
Target:  5'- cGGCGcCGGACCGaa-UUCGCGCGccGUAg -3'
miRNA:   3'- -CCGCcGUCUGGCacgAAGCGCGC--CAU- -5'
26191 5' -59.8 NC_005342.2 + 5018 0.66 0.42402
Target:  5'- aGGCGGCcGGCUGUugGCcgacgUCGgCGCGGc- -3'
miRNA:   3'- -CCGCCGuCUGGCA--CGa----AGC-GCGCCau -5'
26191 5' -59.8 NC_005342.2 + 23690 0.68 0.337051
Target:  5'- uGGcCGGCGGAaaaCCGaGCgauuggcUCGCGCGGg- -3'
miRNA:   3'- -CC-GCCGUCU---GGCaCGa------AGCGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 18804 0.67 0.351709
Target:  5'- cGCGGCcgcaGGGCgCGUGCUgcuaucgaagccCGCGCGGc- -3'
miRNA:   3'- cCGCCG----UCUG-GCACGAa-----------GCGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 2860 0.67 0.373668
Target:  5'- cGGCGGCgAGGCugauguuggcagagaCGUGCU--GCGCGGc- -3'
miRNA:   3'- -CCGCCG-UCUG---------------GCACGAagCGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 3287 0.68 0.311349
Target:  5'- cGGCGGCGcGCgGUugaauuaaacuaucGCUUCGCGCGa-- -3'
miRNA:   3'- -CCGCCGUcUGgCA--------------CGAAGCGCGCcau -5'
26191 5' -59.8 NC_005342.2 + 29767 0.67 0.353365
Target:  5'- uGCuGGUcGACCGUGCcaaaGCGCGGa- -3'
miRNA:   3'- cCG-CCGuCUGGCACGaag-CGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 8941 0.67 0.361729
Target:  5'- cGCgGGCuGGAUCGUGCggccgUGCGCGGc- -3'
miRNA:   3'- cCG-CCG-UCUGGCACGaa---GCGCGCCau -5'
26191 5' -59.8 NC_005342.2 + 4907 0.68 0.329103
Target:  5'- cGGCGGCAGcggcAUCG-GCacggCGCGCGcGUAc -3'
miRNA:   3'- -CCGCCGUC----UGGCaCGaa--GCGCGC-CAU- -5'
26191 5' -59.8 NC_005342.2 + 38983 0.67 0.387636
Target:  5'- gGGaUGcGCGGGCCGUGCUgccggugcagCGCGCGc-- -3'
miRNA:   3'- -CC-GC-CGUCUGGCACGAa---------GCGCGCcau -5'
26191 5' -59.8 NC_005342.2 + 20570 0.74 0.132828
Target:  5'- cGGCGGCGG-CCGgcaGCggUUGCGCGGc- -3'
miRNA:   3'- -CCGCCGUCuGGCa--CGa-AGCGCGCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.