miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26192 3' -51.4 NC_005342.2 + 13491 0.66 0.883087
Target:  5'- cGGUGCGCaCGAccGUCauccaugaUCAggcguucggccGCGCGCACc -3'
miRNA:   3'- -CCGUGCG-GCUuuUAG--------AGU-----------UGCGCGUG- -5'
26192 3' -51.4 NC_005342.2 + 13740 0.66 0.883087
Target:  5'- cGCGCGCCGc---UCgcgCGGCGUGUAg -3'
miRNA:   3'- cCGUGCGGCuuuuAGa--GUUGCGCGUg -5'
26192 3' -51.4 NC_005342.2 + 47551 0.66 0.883087
Target:  5'- cGCAgGCUGA---UCgugCAGCGCGC-Cg -3'
miRNA:   3'- cCGUgCGGCUuuuAGa--GUUGCGCGuG- -5'
26192 3' -51.4 NC_005342.2 + 32055 0.66 0.883087
Target:  5'- cGGC-UGCCGGGucgCUgcccgaUAGCGUGCGCa -3'
miRNA:   3'- -CCGuGCGGCUUuuaGA------GUUGCGCGUG- -5'
26192 3' -51.4 NC_005342.2 + 25182 0.66 0.883087
Target:  5'- uGCGCGCCGccgugCUCGcCGUGCcCg -3'
miRNA:   3'- cCGUGCGGCuuuuaGAGUuGCGCGuG- -5'
26192 3' -51.4 NC_005342.2 + 26876 0.66 0.883087
Target:  5'- uGCAgGCCGGGccGUCggCAACgaaGCGCGCc -3'
miRNA:   3'- cCGUgCGGCUUu-UAGa-GUUG---CGCGUG- -5'
26192 3' -51.4 NC_005342.2 + 45915 0.66 0.882306
Target:  5'- gGGCgcgucucGCGCCGGA----UCAGCGCcagGCGCu -3'
miRNA:   3'- -CCG-------UGCGGCUUuuagAGUUGCG---CGUG- -5'
26192 3' -51.4 NC_005342.2 + 9488 0.66 0.882306
Target:  5'- uGGCGCGCaagacggCGAAccggaCGGCGUGCGCa -3'
miRNA:   3'- -CCGUGCG-------GCUUuuagaGUUGCGCGUG- -5'
26192 3' -51.4 NC_005342.2 + 39464 0.66 0.881522
Target:  5'- aGGCAgGCCGAccagga-AGCGCGC-Cg -3'
miRNA:   3'- -CCGUgCGGCUuuuagagUUGCGCGuG- -5'
26192 3' -51.4 NC_005342.2 + 11245 0.66 0.875155
Target:  5'- uGCAgGCCGAGu-UCgCGuugcCGCGCGCu -3'
miRNA:   3'- cCGUgCGGCUUuuAGaGUu---GCGCGUG- -5'
26192 3' -51.4 NC_005342.2 + 4579 0.66 0.875155
Target:  5'- cGGcCGCGCCGgcAGUUUCGAgGUaccguaauugaGCGCc -3'
miRNA:   3'- -CC-GUGCGGCuuUUAGAGUUgCG-----------CGUG- -5'
26192 3' -51.4 NC_005342.2 + 41129 0.66 0.875155
Target:  5'- aGCACGCgcacaugauCGAAcaggcgcugCUCGACGCGgGCg -3'
miRNA:   3'- cCGUGCG---------GCUUuua------GAGUUGCGCgUG- -5'
26192 3' -51.4 NC_005342.2 + 11020 0.66 0.875155
Target:  5'- aGCGCGcCCGGGucgaauUCUCGACcgccggGCGUGCg -3'
miRNA:   3'- cCGUGC-GGCUUuu----AGAGUUG------CGCGUG- -5'
26192 3' -51.4 NC_005342.2 + 3085 0.66 0.875155
Target:  5'- cGGCGgccagcUGCCGuacGAUCUgAAguuCGCGCGCu -3'
miRNA:   3'- -CCGU------GCGGCuu-UUAGAgUU---GCGCGUG- -5'
26192 3' -51.4 NC_005342.2 + 29656 0.66 0.875155
Target:  5'- cGCuuCGCCGAcGA-CUaccGCGCGCGCu -3'
miRNA:   3'- cCGu-GCGGCUuUUaGAgu-UGCGCGUG- -5'
26192 3' -51.4 NC_005342.2 + 43964 0.66 0.875155
Target:  5'- gGGCA-GCCGGAAcgUgaagCAguAgGCGCGCg -3'
miRNA:   3'- -CCGUgCGGCUUUuaGa---GU--UgCGCGUG- -5'
26192 3' -51.4 NC_005342.2 + 38484 0.66 0.875155
Target:  5'- cGGCAucgccgagcuUGCCGAAAuGUCcggCAugGgGCGCc -3'
miRNA:   3'- -CCGU----------GCGGCUUU-UAGa--GUugCgCGUG- -5'
26192 3' -51.4 NC_005342.2 + 7377 0.66 0.874347
Target:  5'- aGGU-CGCCGu--GUCcuugccuUCGACGCGCGg -3'
miRNA:   3'- -CCGuGCGGCuuuUAG-------AGUUGCGCGUg -5'
26192 3' -51.4 NC_005342.2 + 12622 0.66 0.866953
Target:  5'- aGGCGCaGUCGGAcGUaCUguACGUGCAg -3'
miRNA:   3'- -CCGUG-CGGCUUuUA-GAguUGCGCGUg -5'
26192 3' -51.4 NC_005342.2 + 9409 0.66 0.866953
Target:  5'- cGCACGCCGuccggUUCGccgucuUGCGCGCc -3'
miRNA:   3'- cCGUGCGGCuuuuaGAGUu-----GCGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.