miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26198 5' -53.6 NC_005342.2 + 28995 0.66 0.791748
Target:  5'- -aCGGCUGGaacGAcgccAUGCG-CGGGUGCg -3'
miRNA:   3'- uaGCUGACCaa-CU----UGCGCaGCUCGCG- -5'
26198 5' -53.6 NC_005342.2 + 8154 0.66 0.791748
Target:  5'- cAUCGcguACUcGG-UGAGCgGCGUCGAGaCGUu -3'
miRNA:   3'- -UAGC---UGA-CCaACUUG-CGCAGCUC-GCG- -5'
26198 5' -53.6 NC_005342.2 + 21320 0.66 0.790749
Target:  5'- uGUCGuACUGGUUGAuCGCGaaguuaggcccguUCcaGAuGCGCg -3'
miRNA:   3'- -UAGC-UGACCAACUuGCGC-------------AG--CU-CGCG- -5'
26198 5' -53.6 NC_005342.2 + 12140 0.66 0.781689
Target:  5'- uUCGACgGGUUcuuucACGCGuUCGuuGCGCa -3'
miRNA:   3'- uAGCUGaCCAAcu---UGCGC-AGCu-CGCG- -5'
26198 5' -53.6 NC_005342.2 + 5024 0.66 0.771469
Target:  5'- -cCGGCU-GUUGGcCGaCGUCG-GCGCg -3'
miRNA:   3'- uaGCUGAcCAACUuGC-GCAGCuCGCG- -5'
26198 5' -53.6 NC_005342.2 + 47752 0.66 0.7611
Target:  5'- cAUCGGCgcguucUGGcUUGcccgcgcgcucuGGCGUGUUGGGCGCu -3'
miRNA:   3'- -UAGCUG------ACC-AAC------------UUGCGCAGCUCGCG- -5'
26198 5' -53.6 NC_005342.2 + 21519 0.66 0.750593
Target:  5'- uGUCGAC-GG----GCGCGUCGAaCGCg -3'
miRNA:   3'- -UAGCUGaCCaacuUGCGCAGCUcGCG- -5'
26198 5' -53.6 NC_005342.2 + 7921 0.66 0.750593
Target:  5'- --aGACg---UGGACGCGauggggCGAGCGCg -3'
miRNA:   3'- uagCUGaccaACUUGCGCa-----GCUCGCG- -5'
26198 5' -53.6 NC_005342.2 + 28569 0.67 0.729215
Target:  5'- -cCGGCUGcGUucguaaccUGcACGC-UCGAGCGCu -3'
miRNA:   3'- uaGCUGAC-CA--------ACuUGCGcAGCUCGCG- -5'
26198 5' -53.6 NC_005342.2 + 8878 0.67 0.729215
Target:  5'- cUUGGCgaGGUUG---GCGUCGAuGCGCg -3'
miRNA:   3'- uAGCUGa-CCAACuugCGCAGCU-CGCG- -5'
26198 5' -53.6 NC_005342.2 + 15111 0.67 0.728134
Target:  5'- gAUCGACUuggcgucGGUUGAguuGCgGCGagCGAGCGg -3'
miRNA:   3'- -UAGCUGA-------CCAACU---UG-CGCa-GCUCGCg -5'
26198 5' -53.6 NC_005342.2 + 25480 0.67 0.715096
Target:  5'- -gCGACUgccgGGUUGcgcgucaugaaguaGAUGCGgcCGAGCGCg -3'
miRNA:   3'- uaGCUGA----CCAAC--------------UUGCGCa-GCUCGCG- -5'
26198 5' -53.6 NC_005342.2 + 40446 0.67 0.695315
Target:  5'- -gCGGCaaGUcgcuccUGAACGCGaugcugaUCGAGCGCa -3'
miRNA:   3'- uaGCUGacCA------ACUUGCGC-------AGCUCGCG- -5'
26198 5' -53.6 NC_005342.2 + 37117 0.67 0.69421
Target:  5'- -gCGACgcagauucGAGCGCGUCGAGCa- -3'
miRNA:   3'- uaGCUGaccaa---CUUGCGCAGCUCGcg -5'
26198 5' -53.6 NC_005342.2 + 19922 0.67 0.685343
Target:  5'- cAUCGACgac--GAGCGCGcCGGGCGg -3'
miRNA:   3'- -UAGCUGaccaaCUUGCGCaGCUCGCg -5'
26198 5' -53.6 NC_005342.2 + 13324 0.67 0.685343
Target:  5'- uUCGGCacGGUguacGGGCGCGgcaCGAGCGg -3'
miRNA:   3'- uAGCUGa-CCAa---CUUGCGCa--GCUCGCg -5'
26198 5' -53.6 NC_005342.2 + 40018 0.68 0.674213
Target:  5'- cGUCGAUcGGUUGGccggcCGCGUCGcgcacuucguacAGCGUg -3'
miRNA:   3'- -UAGCUGaCCAACUu----GCGCAGC------------UCGCG- -5'
26198 5' -53.6 NC_005342.2 + 15438 0.68 0.674213
Target:  5'- gAUCGACgcgcUUG-GCGUGcCGAGCGCa -3'
miRNA:   3'- -UAGCUGacc-AACuUGCGCaGCUCGCG- -5'
26198 5' -53.6 NC_005342.2 + 23445 0.68 0.663041
Target:  5'- gGUCGACguaucggGGUUGAcCGCauuguuGUCGGccGCGCu -3'
miRNA:   3'- -UAGCUGa------CCAACUuGCG------CAGCU--CGCG- -5'
26198 5' -53.6 NC_005342.2 + 44624 0.68 0.629391
Target:  5'- gAUCGAgCUGcGUcucGAUGCGUCGcGCGCg -3'
miRNA:   3'- -UAGCU-GAC-CAac-UUGCGCAGCuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.