miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26199 5' -55 NC_005342.2 + 29481 0.65 0.722166
Target:  5'- uUGGauGCCGUUGACGagcUGGCGCgGGUCa -3'
miRNA:   3'- uAUC--UGGCAGCUGCga-GCUGCG-CUAG- -5'
26199 5' -55 NC_005342.2 + 45550 0.65 0.721091
Target:  5'- --uGACCuguucugGUCGGugcUGCUCGAUGuCGAUCg -3'
miRNA:   3'- uauCUGG-------CAGCU---GCGAGCUGC-GCUAG- -5'
26199 5' -55 NC_005342.2 + 40844 0.66 0.715699
Target:  5'- -aAGGCCGUuccgcucacgcagugCGGucUGUUCGACGCGAa- -3'
miRNA:   3'- uaUCUGGCA---------------GCU--GCGAGCUGCGCUag -5'
26199 5' -55 NC_005342.2 + 6789 0.66 0.71137
Target:  5'- --cGACCGg-GGCGC-CGugGCGcUCg -3'
miRNA:   3'- uauCUGGCagCUGCGaGCugCGCuAG- -5'
26199 5' -55 NC_005342.2 + 21984 0.66 0.71137
Target:  5'- -cGGGCCGUUuucuuUGCgUCGGCGCGaAUCa -3'
miRNA:   3'- uaUCUGGCAGcu---GCG-AGCUGCGC-UAG- -5'
26199 5' -55 NC_005342.2 + 21683 0.66 0.71137
Target:  5'- --uGACgGcCGAgcaGCUCGACGCGcUCu -3'
miRNA:   3'- uauCUGgCaGCUg--CGAGCUGCGCuAG- -5'
26199 5' -55 NC_005342.2 + 13877 0.66 0.71137
Target:  5'- -cGGGCUGcgCGGCgGC-CGuCGCGAUCg -3'
miRNA:   3'- uaUCUGGCa-GCUG-CGaGCuGCGCUAG- -5'
26199 5' -55 NC_005342.2 + 32828 0.66 0.71137
Target:  5'- --cGACCGcuacgcacgugCGGCGCUCaaaGCGAUCg -3'
miRNA:   3'- uauCUGGCa----------GCUGCGAGcugCGCUAG- -5'
26199 5' -55 NC_005342.2 + 44321 0.66 0.71137
Target:  5'- -aGGugCG-CGAgaagUGCUCGGgGUGAUCg -3'
miRNA:   3'- uaUCugGCaGCU----GCGAGCUgCGCUAG- -5'
26199 5' -55 NC_005342.2 + 17466 0.66 0.708115
Target:  5'- -aAGGCCGcCGcgcucacgcugcuuGCGCUCGACcgcacCGAUCu -3'
miRNA:   3'- uaUCUGGCaGC--------------UGCGAGCUGc----GCUAG- -5'
26199 5' -55 NC_005342.2 + 19948 0.66 0.700494
Target:  5'- -gAGccGCCGUCGAUGCUuugccCGACuGCGcgCu -3'
miRNA:   3'- uaUC--UGGCAGCUGCGA-----GCUG-CGCuaG- -5'
26199 5' -55 NC_005342.2 + 37119 0.66 0.700494
Target:  5'- -----aCGUCGGCGCUCGcgguuuGCGCGGc- -3'
miRNA:   3'- uaucugGCAGCUGCGAGC------UGCGCUag -5'
26199 5' -55 NC_005342.2 + 14079 0.66 0.700494
Target:  5'- ---uACCGUCGACGCuaUCGuCGUGGc- -3'
miRNA:   3'- uaucUGGCAGCUGCG--AGCuGCGCUag -5'
26199 5' -55 NC_005342.2 + 9030 0.66 0.693935
Target:  5'- --cGACaCGUCGACGC-CGAucugcgugagcgccuCGCGGUa -3'
miRNA:   3'- uauCUG-GCAGCUGCGaGCU---------------GCGCUAg -5'
26199 5' -55 NC_005342.2 + 8113 0.66 0.689549
Target:  5'- -gAGcCCGUCGACGacaggUGugGCGAc- -3'
miRNA:   3'- uaUCuGGCAGCUGCga---GCugCGCUag -5'
26199 5' -55 NC_005342.2 + 23041 0.66 0.678549
Target:  5'- --cGACCGguaccgCGACGCUgcCGGCgGCGAa- -3'
miRNA:   3'- uauCUGGCa-----GCUGCGA--GCUG-CGCUag -5'
26199 5' -55 NC_005342.2 + 44722 0.66 0.678549
Target:  5'- gAUAGcuGCCGacuucuUCGGCGCgcgCGACGC-AUCg -3'
miRNA:   3'- -UAUC--UGGC------AGCUGCGa--GCUGCGcUAG- -5'
26199 5' -55 NC_005342.2 + 19561 0.66 0.677446
Target:  5'- ---cACgGUCGGCGCggcacaaggggaaUCGcGCGCGAUCa -3'
miRNA:   3'- uaucUGgCAGCUGCG-------------AGC-UGCGCUAG- -5'
26199 5' -55 NC_005342.2 + 47223 0.66 0.667504
Target:  5'- cGUAGcuGCgGUCGccugcgcguCGCUCGGCGCGGg- -3'
miRNA:   3'- -UAUC--UGgCAGCu--------GCGAGCUGCGCUag -5'
26199 5' -55 NC_005342.2 + 29691 0.66 0.667504
Target:  5'- --cGGCCGagGACGCcgcgCGugGCccGAUCg -3'
miRNA:   3'- uauCUGGCagCUGCGa---GCugCG--CUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.