miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
262 5' -56 AC_000008.1 + 2794 0.66 0.514158
Target:  5'- aGCCUGUGGCUca--GCAGCUGGaCAGc -3'
miRNA:   3'- -CGGGCAUCGGucacCGUUGACC-GUUu -5'
262 5' -56 AC_000008.1 + 1727 0.66 0.492355
Target:  5'- aCCCGaAGCCAGggGGCGcCUGGa--- -3'
miRNA:   3'- cGGGCaUCGGUCa-CCGUuGACCguuu -5'
262 5' -56 AC_000008.1 + 12180 0.66 0.460481
Target:  5'- gGCCgGaccugGGCUggcGGUGGCAcccgcgcgcGCUGGCAAc -3'
miRNA:   3'- -CGGgCa----UCGG---UCACCGU---------UGACCGUUu -5'
262 5' -56 AC_000008.1 + 12075 0.67 0.429734
Target:  5'- gGCCC-UGGCUGGcacgGGCAGC-GGCGAu -3'
miRNA:   3'- -CGGGcAUCGGUCa---CCGUUGaCCGUUu -5'
262 5' -56 AC_000008.1 + 25428 0.68 0.381289
Target:  5'- cGCuCCGUGGCCGc--GCAcCUGGCGGAc -3'
miRNA:   3'- -CG-GGCAUCGGUcacCGUuGACCGUUU- -5'
262 5' -56 AC_000008.1 + 18675 0.68 0.354024
Target:  5'- uGCCCucuGUGG-CGGUGGCAauACUGGUg-- -3'
miRNA:   3'- -CGGG---CAUCgGUCACCGU--UGACCGuuu -5'
262 5' -56 AC_000008.1 + 23810 0.69 0.328165
Target:  5'- uGCCCGUgccAGCCAG-GGCccuuugcaGGCUGuGCAu- -3'
miRNA:   3'- -CGGGCA---UCGGUCaCCG--------UUGAC-CGUuu -5'
262 5' -56 AC_000008.1 + 19638 0.7 0.30373
Target:  5'- cGCCCGUcGGCCGGU-GCGACgUGcGCGGu -3'
miRNA:   3'- -CGGGCA-UCGGUCAcCGUUG-AC-CGUUu -5'
262 5' -56 AC_000008.1 + 9733 0.74 0.161335
Target:  5'- aGCaCCGUGGCgGGcGGCAGCgGGCGGc -3'
miRNA:   3'- -CG-GGCAUCGgUCaCCGUUGaCCGUUu -5'
262 5' -56 AC_000008.1 + 14199 0.76 0.113744
Target:  5'- aGCgCGgcGCCAGUGGCGGC-GGCGc- -3'
miRNA:   3'- -CGgGCauCGGUCACCGUUGaCCGUuu -5'
262 5' -56 AC_000008.1 + 18649 1.08 0.000426
Target:  5'- gGCCCGUAGCCAGUGGCAACUGGCAAAg -3'
miRNA:   3'- -CGGGCAUCGGUCACCGUUGACCGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.