miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26201 5' -60.2 NC_005342.2 + 22232 0.66 0.436346
Target:  5'- --gGCUGCCGCCGGCgAcAAGgagaaGCa- -3'
miRNA:   3'- cagCGACGGCGGCCGgUaUUCg----CGcc -5'
26201 5' -60.2 NC_005342.2 + 37465 0.66 0.436346
Target:  5'- -aCGC-GCCggGCCGGCCGacGAGCGgguCGGg -3'
miRNA:   3'- caGCGaCGG--CGGCCGGUa-UUCGC---GCC- -5'
26201 5' -60.2 NC_005342.2 + 35811 0.66 0.436346
Target:  5'- -gCGCUGCgCGCCaGCCAcgUAcgcaagguuGGCGaCGGc -3'
miRNA:   3'- caGCGACG-GCGGcCGGU--AU---------UCGC-GCC- -5'
26201 5' -60.2 NC_005342.2 + 2381 0.66 0.433513
Target:  5'- gGUCGCcugGUCGCCGuacagcggcaacguGCCuugguacGGCGCGGc -3'
miRNA:   3'- -CAGCGa--CGGCGGC--------------CGGuau----UCGCGCC- -5'
26201 5' -60.2 NC_005342.2 + 29607 0.66 0.426944
Target:  5'- -gCGCUGCgCGauCgGGCCAc--GCGCGGc -3'
miRNA:   3'- caGCGACG-GC--GgCCGGUauuCGCGCC- -5'
26201 5' -60.2 NC_005342.2 + 2730 0.66 0.426944
Target:  5'- aUUGCgGCCGCCGuGCCGgucGCGUu- -3'
miRNA:   3'- cAGCGaCGGCGGC-CGGUauuCGCGcc -5'
26201 5' -60.2 NC_005342.2 + 14297 0.66 0.426944
Target:  5'- -gUGCcGCCGCuCGGCUcgaaagAGGCGCGc -3'
miRNA:   3'- caGCGaCGGCG-GCCGGua----UUCGCGCc -5'
26201 5' -60.2 NC_005342.2 + 29549 0.66 0.424146
Target:  5'- -gCGC-GCCGCCGGUCGacUGgucauucgcggcgaAGCGCGc -3'
miRNA:   3'- caGCGaCGGCGGCCGGU--AU--------------UCGCGCc -5'
26201 5' -60.2 NC_005342.2 + 26015 0.66 0.423216
Target:  5'- -cCGCguacugGCCGCCGGCaucgacgccGCGCGc -3'
miRNA:   3'- caGCGa-----CGGCGGCCGguauu----CGCGCc -5'
26201 5' -60.2 NC_005342.2 + 25376 0.66 0.417662
Target:  5'- cGUCGCggccGUCGCCGG-CGUcGGCcCGGu -3'
miRNA:   3'- -CAGCGa---CGGCGGCCgGUAuUCGcGCC- -5'
26201 5' -60.2 NC_005342.2 + 41723 0.66 0.417662
Target:  5'- uGUCGgUGCgcgugaagCGCgCGGCCAacGAGCGgGGc -3'
miRNA:   3'- -CAGCgACG--------GCG-GCCGGUa-UUCGCgCC- -5'
26201 5' -60.2 NC_005342.2 + 31020 0.66 0.417662
Target:  5'- -gCGCUgcGCCGCgCGGCCGU---CGCGa -3'
miRNA:   3'- caGCGA--CGGCG-GCCGGUAuucGCGCc -5'
26201 5' -60.2 NC_005342.2 + 7916 0.66 0.414901
Target:  5'- -cCGCUGUCGCCGucggacgaguagucGCCAUA--CGUGGc -3'
miRNA:   3'- caGCGACGGCGGC--------------CGGUAUucGCGCC- -5'
26201 5' -60.2 NC_005342.2 + 30885 0.66 0.408504
Target:  5'- cUCGC-GCCGCUgacgGGCCA--GGCGCc- -3'
miRNA:   3'- cAGCGaCGGCGG----CCGGUauUCGCGcc -5'
26201 5' -60.2 NC_005342.2 + 30946 0.66 0.408504
Target:  5'- gGUCGCgacgGCCGCgCGGCgc--AGCGCc- -3'
miRNA:   3'- -CAGCGa---CGGCG-GCCGguauUCGCGcc -5'
26201 5' -60.2 NC_005342.2 + 18783 0.66 0.399473
Target:  5'- aUCGCUGaaccgcgcuuaUCGCgCGGCCGcaGGGCGCGu -3'
miRNA:   3'- cAGCGAC-----------GGCG-GCCGGUa-UUCGCGCc -5'
26201 5' -60.2 NC_005342.2 + 5022 0.66 0.399473
Target:  5'- --gGCcgGCUGuuGGCCGacgucGGCGCGGc -3'
miRNA:   3'- cagCGa-CGGCggCCGGUau---UCGCGCC- -5'
26201 5' -60.2 NC_005342.2 + 42477 0.66 0.399473
Target:  5'- -cCGCccGCuCGUCGGCC---GGCGUGGa -3'
miRNA:   3'- caGCGa-CG-GCGGCCGGuauUCGCGCC- -5'
26201 5' -60.2 NC_005342.2 + 823 0.66 0.399473
Target:  5'- uUUGCUGCCcUgGGCCAUAGGCa--- -3'
miRNA:   3'- cAGCGACGGcGgCCGGUAUUCGcgcc -5'
26201 5' -60.2 NC_005342.2 + 20314 0.66 0.399473
Target:  5'- cGUgGUUGCCaggcuuGCCGGCCGUGc-CGaCGGg -3'
miRNA:   3'- -CAgCGACGG------CGGCCGGUAUucGC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.