miRNA display CGI


Results 1 - 20 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26204 3' -58 NC_005342.2 + 41471 0.66 0.558773
Target:  5'- gUUGCCGccCGCGUCGAGCACga--GGa -3'
miRNA:   3'- -AACGGCcaGCGCGGCUUGUGguagCC- -5'
26204 3' -58 NC_005342.2 + 18875 0.66 0.558773
Target:  5'- -cGCCGGg-GCGCCcaGAACG-CAUCGa -3'
miRNA:   3'- aaCGGCCagCGCGG--CUUGUgGUAGCc -5'
26204 3' -58 NC_005342.2 + 19901 0.66 0.558773
Target:  5'- -gGCCaucCGCGCCGuccGCAUCAUCGa -3'
miRNA:   3'- aaCGGccaGCGCGGCu--UGUGGUAGCc -5'
26204 3' -58 NC_005342.2 + 776 0.66 0.558773
Target:  5'- gUGCCGGUCGCcggcgcagGaCCGAACAgCugcacuUCGa -3'
miRNA:   3'- aACGGCCAGCG--------C-GGCUUGUgGu-----AGCc -5'
26204 3' -58 NC_005342.2 + 18495 0.66 0.558773
Target:  5'- cUGCCGG-CaCGCCGAcggacGCugCAgCGGc -3'
miRNA:   3'- aACGGCCaGcGCGGCU-----UGugGUaGCC- -5'
26204 3' -58 NC_005342.2 + 25029 0.66 0.555569
Target:  5'- -cGCCGGaaucggguaguucgUCGCGCCGuaguugaucGCACUGUCa- -3'
miRNA:   3'- aaCGGCC--------------AGCGCGGCu--------UGUGGUAGcc -5'
26204 3' -58 NC_005342.2 + 28492 0.66 0.548114
Target:  5'- aUGCCGGaagUCGUGCUGcuCGCgAUCuGGc -3'
miRNA:   3'- aACGGCC---AGCGCGGCuuGUGgUAG-CC- -5'
26204 3' -58 NC_005342.2 + 26518 0.66 0.548114
Target:  5'- -aGuCCGG-CGCGCCGAcaggugcggcgaACugCA-CGGa -3'
miRNA:   3'- aaC-GGCCaGCGCGGCU------------UGugGUaGCC- -5'
26204 3' -58 NC_005342.2 + 27257 0.66 0.548114
Target:  5'- -aGCaCGGUC-UGCCGccACACC-UCGGg -3'
miRNA:   3'- aaCG-GCCAGcGCGGCu-UGUGGuAGCC- -5'
26204 3' -58 NC_005342.2 + 47394 0.66 0.548114
Target:  5'- cUGCgGGUC-CaCCGAuuucGCACCAUCGc -3'
miRNA:   3'- aACGgCCAGcGcGGCU----UGUGGUAGCc -5'
26204 3' -58 NC_005342.2 + 6787 0.66 0.541749
Target:  5'- -cGCCuGUCGCaacggcggcacuccgGCgGGGCACuCGUCGGc -3'
miRNA:   3'- aaCGGcCAGCG---------------CGgCUUGUG-GUAGCC- -5'
26204 3' -58 NC_005342.2 + 39596 0.66 0.541749
Target:  5'- -aGCCGGguaugCGCguucggacggccacaGCgCGAGCGgCGUCGGu -3'
miRNA:   3'- aaCGGCCa----GCG---------------CG-GCUUGUgGUAGCC- -5'
26204 3' -58 NC_005342.2 + 9028 0.66 0.53752
Target:  5'- -cGUCGGUCGcCGCCGcGCACgGcCGc -3'
miRNA:   3'- aaCGGCCAGC-GCGGCuUGUGgUaGCc -5'
26204 3' -58 NC_005342.2 + 18382 0.66 0.53752
Target:  5'- -cGCCGGcaucaugcUCGUGCCGuccgaagcgcAACGCCucgcgAUCGGc -3'
miRNA:   3'- aaCGGCC--------AGCGCGGC----------UUGUGG-----UAGCC- -5'
26204 3' -58 NC_005342.2 + 41142 0.66 0.53752
Target:  5'- -gGUCGGgcgCGUGCuCGAGCGCCAc--- -3'
miRNA:   3'- aaCGGCCa--GCGCG-GCUUGUGGUagcc -5'
26204 3' -58 NC_005342.2 + 20661 0.66 0.53752
Target:  5'- -gGCCGaGcCGCGCCugcagaAACACCA-CGGc -3'
miRNA:   3'- aaCGGC-CaGCGCGGc-----UUGUGGUaGCC- -5'
26204 3' -58 NC_005342.2 + 10802 0.66 0.53752
Target:  5'- --uUCGGUUGCGCCGG--GCCGcgCGGu -3'
miRNA:   3'- aacGGCCAGCGCGGCUugUGGUa-GCC- -5'
26204 3' -58 NC_005342.2 + 23833 0.66 0.526996
Target:  5'- gUGCCGuUCGCGCaGAACGacUCGUCGc -3'
miRNA:   3'- aACGGCcAGCGCGgCUUGU--GGUAGCc -5'
26204 3' -58 NC_005342.2 + 18652 0.66 0.526996
Target:  5'- -cGCCGGUCGUuuguuGCaCGAACGgguUCGGa -3'
miRNA:   3'- aaCGGCCAGCG-----CG-GCUUGUgguAGCC- -5'
26204 3' -58 NC_005342.2 + 19816 0.66 0.526996
Target:  5'- -gGCCGaUCGCGUCGuugacggcagcGGCGCCGUCu- -3'
miRNA:   3'- aaCGGCcAGCGCGGC-----------UUGUGGUAGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.