miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26205 5' -56.3 NC_005342.2 + 6728 0.66 0.60948
Target:  5'- -aCGGCGCc-CCggUCGcGCGCCUCGa- -3'
miRNA:   3'- ugGCCGCGuuGGa-AGU-UGCGGAGCaa -5'
26205 5' -56.3 NC_005342.2 + 32876 0.66 0.60948
Target:  5'- aGCCGGCacGCGGCCggcuaAGCGCUUCc-- -3'
miRNA:   3'- -UGGCCG--CGUUGGaag--UUGCGGAGcaa -5'
26205 5' -56.3 NC_005342.2 + 45303 0.66 0.598339
Target:  5'- cGCCGGCGCGACgCUgcaGGCuGCCggUGUc -3'
miRNA:   3'- -UGGCCGCGUUG-GAag-UUG-CGGa-GCAa -5'
26205 5' -56.3 NC_005342.2 + 9335 0.66 0.598339
Target:  5'- cGCgCGGCGUcgGGCCUUCuu--CCUCGUUg -3'
miRNA:   3'- -UG-GCCGCG--UUGGAAGuugcGGAGCAA- -5'
26205 5' -56.3 NC_005342.2 + 18172 0.66 0.598339
Target:  5'- uGCCGGCGU-GCCgggUGAUGCgCUCGUc -3'
miRNA:   3'- -UGGCCGCGuUGGaa-GUUGCG-GAGCAa -5'
26205 5' -56.3 NC_005342.2 + 8751 0.66 0.587229
Target:  5'- aGCUGGCGaagucGCCggCAAUGCCUUGc- -3'
miRNA:   3'- -UGGCCGCgu---UGGaaGUUGCGGAGCaa -5'
26205 5' -56.3 NC_005342.2 + 38019 0.66 0.587229
Target:  5'- gACCGuGCacgcgGCGACCggCGaaauGCGCCUCGa- -3'
miRNA:   3'- -UGGC-CG-----CGUUGGaaGU----UGCGGAGCaa -5'
26205 5' -56.3 NC_005342.2 + 39052 0.66 0.587229
Target:  5'- cGCCGGCGCGaacgaaGCCgcgucgcgcaUCGACGCCaaccUCGc- -3'
miRNA:   3'- -UGGCCGCGU------UGGa---------AGUUGCGG----AGCaa -5'
26205 5' -56.3 NC_005342.2 + 28629 0.66 0.587229
Target:  5'- gGCCGGCGCGuacuuGCCgUCGgugcgcagcggcGCGCCgaggcacgCGUUg -3'
miRNA:   3'- -UGGCCGCGU-----UGGaAGU------------UGCGGa-------GCAA- -5'
26205 5' -56.3 NC_005342.2 + 28912 0.66 0.587229
Target:  5'- cGCUGcGCGCAcCCgcgCAugGCgUCGUUc -3'
miRNA:   3'- -UGGC-CGCGUuGGaa-GUugCGgAGCAA- -5'
26205 5' -56.3 NC_005342.2 + 19495 0.66 0.576157
Target:  5'- cGCUGGCGC-GCUggCGGCG-CUCGUg -3'
miRNA:   3'- -UGGCCGCGuUGGaaGUUGCgGAGCAa -5'
26205 5' -56.3 NC_005342.2 + 38369 0.66 0.576157
Target:  5'- aGCCGGUgcGCAACCggcCGAUGCCgCGc- -3'
miRNA:   3'- -UGGCCG--CGUUGGaa-GUUGCGGaGCaa -5'
26205 5' -56.3 NC_005342.2 + 10654 0.66 0.576157
Target:  5'- gGCCGGUGCAcGCUaugcacucggUUCGACGCUguUCGa- -3'
miRNA:   3'- -UGGCCGCGU-UGG----------AAGUUGCGG--AGCaa -5'
26205 5' -56.3 NC_005342.2 + 18382 0.66 0.565132
Target:  5'- cGCCGGCaucauGCucguGCCguccgaagcgCAACGCCUCGc- -3'
miRNA:   3'- -UGGCCG-----CGu---UGGaa--------GUUGCGGAGCaa -5'
26205 5' -56.3 NC_005342.2 + 3176 0.66 0.565132
Target:  5'- uGCCcgGGCGCGGCCgcgcggugUUCAGCGUCUgCGc- -3'
miRNA:   3'- -UGG--CCGCGUUGG--------AAGUUGCGGA-GCaa -5'
26205 5' -56.3 NC_005342.2 + 43386 0.66 0.565132
Target:  5'- uGCCGGCGCGGCCgUUCAugGaaaagaCGa- -3'
miRNA:   3'- -UGGCCGCGUUGG-AAGUugCgga---GCaa -5'
26205 5' -56.3 NC_005342.2 + 2352 0.66 0.554163
Target:  5'- gACgCGGCGUAGCCcaugaCGGCGCCggCGg- -3'
miRNA:   3'- -UG-GCCGCGUUGGaa---GUUGCGGa-GCaa -5'
26205 5' -56.3 NC_005342.2 + 40059 0.66 0.554163
Target:  5'- -gCGGCGCGaauaucaacuACCcgCAACGCCagUCGUa -3'
miRNA:   3'- ugGCCGCGU----------UGGaaGUUGCGG--AGCAa -5'
26205 5' -56.3 NC_005342.2 + 19352 0.66 0.554163
Target:  5'- cGCCGaGCGCGACCgugCGGCacgaGCgCUCGa- -3'
miRNA:   3'- -UGGC-CGCGUUGGaa-GUUG----CG-GAGCaa -5'
26205 5' -56.3 NC_005342.2 + 1477 0.67 0.532425
Target:  5'- aGCgCGGCG-GACaCUUCGACGCCgagugCGUc -3'
miRNA:   3'- -UG-GCCGCgUUG-GAAGUUGCGGa----GCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.