miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26207 3' -54.1 NC_005342.2 + 20153 0.66 0.774546
Target:  5'- -gGCuUCGUGGUCGAcUACUcggcGGACACg -3'
miRNA:   3'- cgCGcAGCGCUAGCUcAUGG----UCUGUG- -5'
26207 3' -54.1 NC_005342.2 + 13846 0.66 0.774546
Target:  5'- aGCGCGcCGCGccgcgCGAaGUcgGCCGG-CACg -3'
miRNA:   3'- -CGCGCaGCGCua---GCU-CA--UGGUCuGUG- -5'
26207 3' -54.1 NC_005342.2 + 38824 0.66 0.764323
Target:  5'- aGCGCGcagcUGCGGUCGAG---CAGGCAa -3'
miRNA:   3'- -CGCGCa---GCGCUAGCUCaugGUCUGUg -5'
26207 3' -54.1 NC_005342.2 + 13887 0.66 0.764323
Target:  5'- gGCGgcCGUCGCGAUCGuAGccgcagcgGCCA-ACGCg -3'
miRNA:   3'- -CGC--GCAGCGCUAGC-UCa-------UGGUcUGUG- -5'
26207 3' -54.1 NC_005342.2 + 32671 0.66 0.753963
Target:  5'- uGCGCGUCgggcagcuuuGCGAcuUCGgcauAGUGCUGGAaCGCg -3'
miRNA:   3'- -CGCGCAG----------CGCU--AGC----UCAUGGUCU-GUG- -5'
26207 3' -54.1 NC_005342.2 + 12964 0.66 0.753963
Target:  5'- gGCGCGcaUCGCaaAUCGAcGUucgcGCCGGGCAUc -3'
miRNA:   3'- -CGCGC--AGCGc-UAGCU-CA----UGGUCUGUG- -5'
26207 3' -54.1 NC_005342.2 + 30317 0.66 0.753963
Target:  5'- uCGCGuauuUCGCGAaCGuGUcggccacggcACCGGGCGCg -3'
miRNA:   3'- cGCGC----AGCGCUaGCuCA----------UGGUCUGUG- -5'
26207 3' -54.1 NC_005342.2 + 44747 0.66 0.743475
Target:  5'- cGCGCGUgGCGcuggCG-GcGCgCAGACGCu -3'
miRNA:   3'- -CGCGCAgCGCua--GCuCaUG-GUCUGUG- -5'
26207 3' -54.1 NC_005342.2 + 20569 0.66 0.743475
Target:  5'- gGCGCGUCG-GGUCGcgccguGGUGuuucugCAGGCGCg -3'
miRNA:   3'- -CGCGCAGCgCUAGC------UCAUg-----GUCUGUG- -5'
26207 3' -54.1 NC_005342.2 + 24139 0.66 0.743475
Target:  5'- cGCGUGagGCGAUCGAcaugACC--GCACa -3'
miRNA:   3'- -CGCGCagCGCUAGCUca--UGGucUGUG- -5'
26207 3' -54.1 NC_005342.2 + 22806 0.66 0.743475
Target:  5'- -aGCGUauCGAUCGguGGUAUCGGGCAg -3'
miRNA:   3'- cgCGCAgcGCUAGC--UCAUGGUCUGUg -5'
26207 3' -54.1 NC_005342.2 + 36222 0.66 0.74242
Target:  5'- cGCGCacucaaggugaacGUCGgugcCGGUCGGcUGCCGGACAUc -3'
miRNA:   3'- -CGCG-------------CAGC----GCUAGCUcAUGGUCUGUG- -5'
26207 3' -54.1 NC_005342.2 + 19048 0.66 0.732872
Target:  5'- uGCGCGggugCGCGcagCGAcccUACCAGuCACu -3'
miRNA:   3'- -CGCGCa---GCGCua-GCUc--AUGGUCuGUG- -5'
26207 3' -54.1 NC_005342.2 + 14938 0.66 0.731806
Target:  5'- cGCGuCGUCGaugauaccgacguCGAUCGAGaACCGGuuaGCg -3'
miRNA:   3'- -CGC-GCAGC-------------GCUAGCUCaUGGUCug-UG- -5'
26207 3' -54.1 NC_005342.2 + 28042 0.67 0.722167
Target:  5'- uCGC-UCGUGAUCGGcGUgagcacgucuuGCCAGAUGCg -3'
miRNA:   3'- cGCGcAGCGCUAGCU-CA-----------UGGUCUGUG- -5'
26207 3' -54.1 NC_005342.2 + 18016 0.67 0.71137
Target:  5'- cGCGCGgCGCG-UCGAucgAUCAGGCGg -3'
miRNA:   3'- -CGCGCaGCGCuAGCUca-UGGUCUGUg -5'
26207 3' -54.1 NC_005342.2 + 9721 0.67 0.71137
Target:  5'- aCGCGUCGCacaGAUCGAcaaagaacGUGuCgAGGCGCu -3'
miRNA:   3'- cGCGCAGCG---CUAGCU--------CAU-GgUCUGUG- -5'
26207 3' -54.1 NC_005342.2 + 16820 0.67 0.700494
Target:  5'- aGCGCGUCGCGGccaaggcgaUCGAcGggcgACUguucGGCACg -3'
miRNA:   3'- -CGCGCAGCGCU---------AGCU-Ca---UGGu---CUGUG- -5'
26207 3' -54.1 NC_005342.2 + 36797 0.67 0.700494
Target:  5'- uGCGCGgauUCGCGcuAUCGAGgacgUCGGGCAg -3'
miRNA:   3'- -CGCGC---AGCGC--UAGCUCau--GGUCUGUg -5'
26207 3' -54.1 NC_005342.2 + 6630 0.67 0.678549
Target:  5'- aGCGCGcucggCGCGcUCGAG---CAGGCGCg -3'
miRNA:   3'- -CGCGCa----GCGCuAGCUCaugGUCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.