miRNA display CGI


Results 21 - 40 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26207 3' -54.1 NC_005342.2 + 6630 0.67 0.678549
Target:  5'- aGCGCGcucggCGCGcUCGAG---CAGGCGCg -3'
miRNA:   3'- -CGCGCa----GCGCuAGCUCaugGUCUGUG- -5'
26207 3' -54.1 NC_005342.2 + 22746 0.67 0.678549
Target:  5'- gGCaGCGUCGCGGgcgucgacgUCGAGUcGCgCAGugAg -3'
miRNA:   3'- -CG-CGCAGCGCU---------AGCUCA-UG-GUCugUg -5'
26207 3' -54.1 NC_005342.2 + 25933 0.68 0.667504
Target:  5'- uUGCG-CGCGGcgUCGAGccggcgGCCAGuACGCg -3'
miRNA:   3'- cGCGCaGCGCU--AGCUCa-----UGGUC-UGUG- -5'
26207 3' -54.1 NC_005342.2 + 18141 0.68 0.667504
Target:  5'- cGCGgGUCGCGcAUCGAcgcGUuCCGucGGCGCu -3'
miRNA:   3'- -CGCgCAGCGC-UAGCU---CAuGGU--CUGUG- -5'
26207 3' -54.1 NC_005342.2 + 2987 0.68 0.667504
Target:  5'- gGCGCcaUCGCGcuUCGA-UGCCGGACAg -3'
miRNA:   3'- -CGCGc-AGCGCu-AGCUcAUGGUCUGUg -5'
26207 3' -54.1 NC_005342.2 + 9140 0.68 0.667504
Target:  5'- -aGCGUCGUuGUauuccuucaCGAGUGCC-GACGCa -3'
miRNA:   3'- cgCGCAGCGcUA---------GCUCAUGGuCUGUG- -5'
26207 3' -54.1 NC_005342.2 + 1869 0.68 0.656425
Target:  5'- gGCgGgGUCGcCGAUCaggaAGUACCAGcCACg -3'
miRNA:   3'- -CG-CgCAGC-GCUAGc---UCAUGGUCuGUG- -5'
26207 3' -54.1 NC_005342.2 + 10384 0.68 0.656425
Target:  5'- -gGCcUCGgGcUCGAGU-CCGGACGCg -3'
miRNA:   3'- cgCGcAGCgCuAGCUCAuGGUCUGUG- -5'
26207 3' -54.1 NC_005342.2 + 20971 0.68 0.638655
Target:  5'- cGCGCGgCGCGggCGAGUgggugcguuucgagcGCguGGCAg -3'
miRNA:   3'- -CGCGCaGCGCuaGCUCA---------------UGguCUGUg -5'
26207 3' -54.1 NC_005342.2 + 11060 0.68 0.634209
Target:  5'- cGCGCGUCGUGAgcggCGuGUcGCC--GCGCu -3'
miRNA:   3'- -CGCGCAGCGCUa---GCuCA-UGGucUGUG- -5'
26207 3' -54.1 NC_005342.2 + 29606 0.68 0.634209
Target:  5'- aGCGCuG-CGCGAUCGG--GCCAcGCGCg -3'
miRNA:   3'- -CGCG-CaGCGCUAGCUcaUGGUcUGUG- -5'
26207 3' -54.1 NC_005342.2 + 19726 0.68 0.623092
Target:  5'- uGCGCGUCaCGGUCaccGUGacgcgcCCGGACGCg -3'
miRNA:   3'- -CGCGCAGcGCUAGcu-CAU------GGUCUGUG- -5'
26207 3' -54.1 NC_005342.2 + 4587 0.68 0.621981
Target:  5'- aGCuuGUUGCGAUCcuGGUggugcagGCCGGACGCa -3'
miRNA:   3'- -CGcgCAGCGCUAGc-UCA-------UGGUCUGUG- -5'
26207 3' -54.1 NC_005342.2 + 11201 0.68 0.620869
Target:  5'- gGCGCGgcuccuugccgGCGcUCGAGUgcuGCCAGACGg -3'
miRNA:   3'- -CGCGCag---------CGCuAGCUCA---UGGUCUGUg -5'
26207 3' -54.1 NC_005342.2 + 35404 0.69 0.600893
Target:  5'- aCGCccuucaGUCGCGAacgCGAGUGucggcUCAGGCACa -3'
miRNA:   3'- cGCG------CAGCGCUa--GCUCAU-----GGUCUGUG- -5'
26207 3' -54.1 NC_005342.2 + 12727 0.69 0.589831
Target:  5'- cGCGCGcaCGUaGUCG--UACCAGACGCg -3'
miRNA:   3'- -CGCGCa-GCGcUAGCucAUGGUCUGUG- -5'
26207 3' -54.1 NC_005342.2 + 45916 0.69 0.567822
Target:  5'- gGCGCGucUCGCgccgGAUC-AGcGCCAGGCGCu -3'
miRNA:   3'- -CGCGC--AGCG----CUAGcUCaUGGUCUGUG- -5'
26207 3' -54.1 NC_005342.2 + 13184 0.69 0.567822
Target:  5'- gGCGCGUCGCGuggacuUCG-GUGCC-GAuCAUc -3'
miRNA:   3'- -CGCGCAGCGCu-----AGCuCAUGGuCU-GUG- -5'
26207 3' -54.1 NC_005342.2 + 19849 0.69 0.567822
Target:  5'- uGCGCGUUGaGAuuuUCGGcGUGCCGcucGACACg -3'
miRNA:   3'- -CGCGCAGCgCU---AGCU-CAUGGU---CUGUG- -5'
26207 3' -54.1 NC_005342.2 + 1796 0.69 0.556893
Target:  5'- aGCGUGUC-CGcu--GGUACCGGACACu -3'
miRNA:   3'- -CGCGCAGcGCuagcUCAUGGUCUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.