miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26207 5' -61.5 NC_005342.2 + 25932 0.66 0.421237
Target:  5'- aUUGCG-CgCGGcgUCGAGCCgGcGGCCa -3'
miRNA:   3'- -AGCGCaG-GCCugAGCUCGGgCuCCGG- -5'
26207 5' -61.5 NC_005342.2 + 27737 0.66 0.421237
Target:  5'- gCGCGaaUCUGGuCggccgcCGAGCCCGucAGGCg -3'
miRNA:   3'- aGCGC--AGGCCuGa-----GCUCGGGC--UCCGg -5'
26207 5' -61.5 NC_005342.2 + 19934 0.66 0.412241
Target:  5'- gCGCG-CCGGGCggcgagccgccgUCGAugcuuuGCCCGAcugcgcgcugucGGCCu -3'
miRNA:   3'- aGCGCaGGCCUG------------AGCU------CGGGCU------------CCGG- -5'
26207 5' -61.5 NC_005342.2 + 12985 0.66 0.403364
Target:  5'- uUCGCG-CCGGGCaucaaCGccuGCgCGAGGUCc -3'
miRNA:   3'- -AGCGCaGGCCUGa----GCu--CGgGCUCCGG- -5'
26207 5' -61.5 NC_005342.2 + 6762 0.66 0.385979
Target:  5'- aCGCGcUCCGacuuCUCGAGCUcgccauggaucaCGAcGGCCg -3'
miRNA:   3'- aGCGC-AGGCcu--GAGCUCGG------------GCU-CCGG- -5'
26207 5' -61.5 NC_005342.2 + 10039 0.66 0.372431
Target:  5'- gCGUGUCgGGAUgccCGAGCUCGgucggaucgcgguacAGGUCg -3'
miRNA:   3'- aGCGCAGgCCUGa--GCUCGGGC---------------UCCGG- -5'
26207 5' -61.5 NC_005342.2 + 40097 0.67 0.36413
Target:  5'- gCGCGgCC-GACUCGAaCCCGguugaagacgggcaaAGGCCg -3'
miRNA:   3'- aGCGCaGGcCUGAGCUcGGGC---------------UCCGG- -5'
26207 5' -61.5 NC_005342.2 + 27336 0.67 0.360846
Target:  5'- cUCGCGUCgaauUGGcC-CGAcuGCgCGAGGCCg -3'
miRNA:   3'- -AGCGCAG----GCCuGaGCU--CGgGCUCCGG- -5'
26207 5' -61.5 NC_005342.2 + 10086 0.67 0.360846
Target:  5'- aCGCGaUUCGGA-UCGAgGCCC-AGGUCg -3'
miRNA:   3'- aGCGC-AGGCCUgAGCU-CGGGcUCCGG- -5'
26207 5' -61.5 NC_005342.2 + 46037 0.67 0.352725
Target:  5'- -aGCGgCCGGugUCGccGGUgCG-GGCCa -3'
miRNA:   3'- agCGCaGGCCugAGC--UCGgGCuCCGG- -5'
26207 5' -61.5 NC_005342.2 + 25294 0.67 0.344735
Target:  5'- gUCGCaaCCGGGC-CGAcGCCggCGAcGGCCg -3'
miRNA:   3'- -AGCGcaGGCCUGaGCU-CGG--GCU-CCGG- -5'
26207 5' -61.5 NC_005342.2 + 13919 0.67 0.343943
Target:  5'- aCGCGgCCGccuuggcGACuUCGGGCCgGcGGCCg -3'
miRNA:   3'- aGCGCaGGC-------CUG-AGCUCGGgCuCCGG- -5'
26207 5' -61.5 NC_005342.2 + 2293 0.67 0.336096
Target:  5'- cCGCGUUgaacuggCGGAacgCGAGCaCCGugcGGCCg -3'
miRNA:   3'- aGCGCAG-------GCCUga-GCUCG-GGCu--CCGG- -5'
26207 5' -61.5 NC_005342.2 + 44727 0.67 0.321551
Target:  5'- gCGCuGUCCGGccGCUCGAccGCgCGuGGCg -3'
miRNA:   3'- aGCG-CAGGCC--UGAGCU--CGgGCuCCGg -5'
26207 5' -61.5 NC_005342.2 + 32103 0.67 0.321551
Target:  5'- cCGCGUCgggguucuCGGugUCG-GCCCGc-GCCu -3'
miRNA:   3'- aGCGCAG--------GCCugAGCuCGGGCucCGG- -5'
26207 5' -61.5 NC_005342.2 + 44384 0.68 0.306754
Target:  5'- gCGCGgcaUUGGugUCGAcgUCGAGGCCg -3'
miRNA:   3'- aGCGCa--GGCCugAGCUcgGGCUCCGG- -5'
26207 5' -61.5 NC_005342.2 + 9312 0.68 0.292483
Target:  5'- gUCGCGUCgUGGuucguCUCGuGCuuGuuGGCCg -3'
miRNA:   3'- -AGCGCAG-GCCu----GAGCuCGggCu-CCGG- -5'
26207 5' -61.5 NC_005342.2 + 26847 0.68 0.285545
Target:  5'- gUCGCGUCgcgcuCGGcaaacACUgCGAGCCCGAuGUCa -3'
miRNA:   3'- -AGCGCAG-----GCC-----UGA-GCUCGGGCUcCGG- -5'
26207 5' -61.5 NC_005342.2 + 29526 0.69 0.272059
Target:  5'- aCGCGcUCgCGGugUCGAcGCCgccgaucgCGAGGCg -3'
miRNA:   3'- aGCGC-AG-GCCugAGCU-CGG--------GCUCCGg -5'
26207 5' -61.5 NC_005342.2 + 33789 0.69 0.271398
Target:  5'- aUUGCGUcaugcugccgcacCCGGACgagCG-GCCCGgcaucGGGCCc -3'
miRNA:   3'- -AGCGCA-------------GGCCUGa--GCuCGGGC-----UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.