miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26209 3' -58.6 NC_005342.2 + 8047 0.66 0.535397
Target:  5'- -cGACGCUGGUCGCGGcguUCAucACcGCa -3'
miRNA:   3'- caCUGCGGCCGGUGCC---AGUucUGcCG- -5'
26209 3' -58.6 NC_005342.2 + 12263 0.66 0.535397
Target:  5'- gGUGAuuggggguUGCCGGCCGgcaaGGUCGAa--GGCa -3'
miRNA:   3'- -CACU--------GCGGCCGGUg---CCAGUUcugCCG- -5'
26209 3' -58.6 NC_005342.2 + 26368 0.66 0.535397
Target:  5'- aUGACGUCGcuGCCGuCGGUCGuGAUaGCg -3'
miRNA:   3'- cACUGCGGC--CGGU-GCCAGUuCUGcCG- -5'
26209 3' -58.6 NC_005342.2 + 44770 0.66 0.535397
Target:  5'- -aGACGCugaacaccgcgCGGCCGCGcccgggCAAGAaaaCGGCg -3'
miRNA:   3'- caCUGCG-----------GCCGGUGCca----GUUCU---GCCG- -5'
26209 3' -58.6 NC_005342.2 + 28603 0.66 0.535397
Target:  5'- cGUGcCGCaCGGUCGCGcucggcgCAGGcCGGCg -3'
miRNA:   3'- -CACuGCG-GCCGGUGCca-----GUUCuGCCG- -5'
26209 3' -58.6 NC_005342.2 + 4636 0.66 0.535397
Target:  5'- -gGGCagGCCGGCgCGCGGgucuuucuUCAGGAucgugccauCGGCg -3'
miRNA:   3'- caCUG--CGGCCG-GUGCC--------AGUUCU---------GCCG- -5'
26209 3' -58.6 NC_005342.2 + 30923 0.66 0.524962
Target:  5'- -cGACauuuGCCGGUUGucaugcCGGUCGcGACGGCc -3'
miRNA:   3'- caCUG----CGGCCGGU------GCCAGUuCUGCCG- -5'
26209 3' -58.6 NC_005342.2 + 8977 0.66 0.524962
Target:  5'- -cGACGCgCGuuCGCGGcuugCcAGGCGGCg -3'
miRNA:   3'- caCUGCG-GCcgGUGCCa---GuUCUGCCG- -5'
26209 3' -58.6 NC_005342.2 + 27885 0.66 0.524962
Target:  5'- cUGcACGCCGGCUGgcuucgUGGUCGAcuacuCGGCg -3'
miRNA:   3'- cAC-UGCGGCCGGU------GCCAGUUcu---GCCG- -5'
26209 3' -58.6 NC_005342.2 + 31879 0.66 0.518738
Target:  5'- -cGGCagGCCGGCCACGcGcuuacucgccgagguUCAGGACGacgaGCg -3'
miRNA:   3'- caCUG--CGGCCGGUGC-C---------------AGUUCUGC----CG- -5'
26209 3' -58.6 NC_005342.2 + 26063 0.66 0.514605
Target:  5'- aGUGGCGCCGcaGCgGCGG-CGcuuccggauucGGGCaGGCg -3'
miRNA:   3'- -CACUGCGGC--CGgUGCCaGU-----------UCUG-CCG- -5'
26209 3' -58.6 NC_005342.2 + 13966 0.66 0.514605
Target:  5'- uUGGcCGCugCGGCUACGaUCGcGACGGCc -3'
miRNA:   3'- cACU-GCG--GCCGGUGCcAGUuCUGCCG- -5'
26209 3' -58.6 NC_005342.2 + 20969 0.66 0.514605
Target:  5'- --cGCGCgCGG-CGCGGgCGAGugGGUg -3'
miRNA:   3'- cacUGCG-GCCgGUGCCaGUUCugCCG- -5'
26209 3' -58.6 NC_005342.2 + 35862 0.66 0.514605
Target:  5'- --aGCGCCGcGUCACGGgccagcucgUCGuaucGGACGGUa -3'
miRNA:   3'- cacUGCGGC-CGGUGCC---------AGU----UCUGCCG- -5'
26209 3' -58.6 NC_005342.2 + 20456 0.66 0.514605
Target:  5'- --uGCGCCGGUCGugacgcagcCGGUUAGcgucccGGCGGCu -3'
miRNA:   3'- cacUGCGGCCGGU---------GCCAGUU------CUGCCG- -5'
26209 3' -58.6 NC_005342.2 + 46845 0.66 0.504332
Target:  5'- gGUGACGaUCGGgCACGGUUAcucGACgcauuuGGCg -3'
miRNA:   3'- -CACUGC-GGCCgGUGCCAGUu--CUG------CCG- -5'
26209 3' -58.6 NC_005342.2 + 5515 0.66 0.504332
Target:  5'- -cGugGCCGGCgACGG-Cu---UGGCg -3'
miRNA:   3'- caCugCGGCCGgUGCCaGuucuGCCG- -5'
26209 3' -58.6 NC_005342.2 + 30812 0.66 0.504332
Target:  5'- -cGGCGCCuGGCC-CG-UCA--GCGGCg -3'
miRNA:   3'- caCUGCGG-CCGGuGCcAGUucUGCCG- -5'
26209 3' -58.6 NC_005342.2 + 30176 0.66 0.504332
Target:  5'- -cGGCGCCGGUCGCu-UCGAcguuCGGCa -3'
miRNA:   3'- caCUGCGGCCGGUGccAGUUcu--GCCG- -5'
26209 3' -58.6 NC_005342.2 + 28308 0.66 0.502288
Target:  5'- --aGCGCCGcgugcgcGUCACGGUCAccgugacgcgcccGGACGcGCa -3'
miRNA:   3'- cacUGCGGC-------CGGUGCCAGU-------------UCUGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.