miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26209 3' -58.6 NC_005342.2 + 38112 1.12 0.000265
Target:  5'- cGUGACGCCGGCCACGGUCAAGACGGCg -3'
miRNA:   3'- -CACUGCGGCCGGUGCCAGUUCUGCCG- -5'
26209 3' -58.6 NC_005342.2 + 20164 0.68 0.388434
Target:  5'- -cGGcCGCCGGCU-CGGgcgCAcacaagaAGGCGGCa -3'
miRNA:   3'- caCU-GCGGCCGGuGCCa--GU-------UCUGCCG- -5'
26209 3' -58.6 NC_005342.2 + 7731 0.68 0.398241
Target:  5'- -cGAgGCCGGCCACGccgaaCAAGuACGaGCc -3'
miRNA:   3'- caCUgCGGCCGGUGCca---GUUC-UGC-CG- -5'
26209 3' -58.6 NC_005342.2 + 26368 0.66 0.535397
Target:  5'- aUGACGUCGcuGCCGuCGGUCGuGAUaGCg -3'
miRNA:   3'- cACUGCGGC--CGGU-GCCAGUuCUGcCG- -5'
26209 3' -58.6 NC_005342.2 + 19600 0.72 0.22181
Target:  5'- -cGACGCgaacaaGGUCACGG-CGAGcGCGGCg -3'
miRNA:   3'- caCUGCGg-----CCGGUGCCaGUUC-UGCCG- -5'
26209 3' -58.6 NC_005342.2 + 25307 0.72 0.233541
Target:  5'- -cGACGCCGGCgACGGcCGcGACGu- -3'
miRNA:   3'- caCUGCGGCCGgUGCCaGUuCUGCcg -5'
26209 3' -58.6 NC_005342.2 + 31810 0.71 0.271882
Target:  5'- -cGGCGUCGG-CGCGuUCAGuGACGGCa -3'
miRNA:   3'- caCUGCGGCCgGUGCcAGUU-CUGCCG- -5'
26209 3' -58.6 NC_005342.2 + 22086 0.7 0.300153
Target:  5'- -aGGCGCCcagguuGGCgACcGUCAAGACGaGCa -3'
miRNA:   3'- caCUGCGG------CCGgUGcCAGUUCUGC-CG- -5'
26209 3' -58.6 NC_005342.2 + 42408 0.69 0.346722
Target:  5'- --cACGCCGGCCgACGagc-GGGCGGCg -3'
miRNA:   3'- cacUGCGGCCGG-UGCcaguUCUGCCG- -5'
26209 3' -58.6 NC_005342.2 + 25088 0.68 0.38403
Target:  5'- -aGACGuagcaauccgucaccCCGGgCACGG-CGAGcACGGCg -3'
miRNA:   3'- caCUGC---------------GGCCgGUGCCaGUUC-UGCCG- -5'
26209 3' -58.6 NC_005342.2 + 37218 0.68 0.371874
Target:  5'- -gGGcCGCCGGCCACGGcCAcgugaAGAucagucguucCGGUg -3'
miRNA:   3'- caCU-GCGGCCGGUGCCaGU-----UCU----------GCCG- -5'
26209 3' -58.6 NC_005342.2 + 21410 0.69 0.346722
Target:  5'- -cGGCGCCGGa-AUGGgCAaauuGGGCGGCg -3'
miRNA:   3'- caCUGCGGCCggUGCCaGU----UCUGCCG- -5'
26209 3' -58.6 NC_005342.2 + 19549 0.82 0.044544
Target:  5'- -gGGCGCCGGUcgCACGGUCGGcGCGGCa -3'
miRNA:   3'- caCUGCGGCCG--GUGCCAGUUcUGCCG- -5'
26209 3' -58.6 NC_005342.2 + 15174 0.68 0.371874
Target:  5'- ---cCGCaCGGCCGgcagcaggcCGGUC-AGACGGCc -3'
miRNA:   3'- cacuGCG-GCCGGU---------GCCAGuUCUGCCG- -5'
26209 3' -58.6 NC_005342.2 + 19717 0.78 0.085712
Target:  5'- -cGGCGCUGGUgGCGuG-CAAGACGGCg -3'
miRNA:   3'- caCUGCGGCCGgUGC-CaGUUCUGCCG- -5'
26209 3' -58.6 NC_005342.2 + 29552 0.7 0.300153
Target:  5'- -cGcCGCCGGUCGacUGGUCAuucGCGGCg -3'
miRNA:   3'- caCuGCGGCCGGU--GCCAGUuc-UGCCG- -5'
26209 3' -58.6 NC_005342.2 + 14148 0.68 0.38053
Target:  5'- -cGAUGCCgGGCCGCucGUCcGGguGCGGCa -3'
miRNA:   3'- caCUGCGG-CCGGUGc-CAGuUC--UGCCG- -5'
26209 3' -58.6 NC_005342.2 + 41362 0.68 0.389319
Target:  5'- -gGGCGCgGGCUGCGGcCGuacGcCGGCa -3'
miRNA:   3'- caCUGCGgCCGGUGCCaGUu--CuGCCG- -5'
26209 3' -58.6 NC_005342.2 + 22178 0.75 0.133628
Target:  5'- -cGGCaGCCGGCgGCGGUUc-GGCGGCu -3'
miRNA:   3'- caCUG-CGGCCGgUGCCAGuuCUGCCG- -5'
26209 3' -58.6 NC_005342.2 + 39355 0.71 0.265157
Target:  5'- -cGACugcuGCCGGacgcgaacuUCACGGUCGccgAGGCGGCg -3'
miRNA:   3'- caCUG----CGGCC---------GGUGCCAGU---UCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.