miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26209 5' -52.2 NC_005342.2 + 16802 0.66 0.849339
Target:  5'- cUUGCCGUGUCGGcGCagaucGUCGuUCCa -3'
miRNA:   3'- -AACGGCGCAGCU-UGaaa--CAGCuAGGc -5'
26209 5' -52.2 NC_005342.2 + 38216 0.66 0.849339
Target:  5'- -cGCaGCGccUCGAcacguuCUUUGUCGAUCUGu -3'
miRNA:   3'- aaCGgCGC--AGCUu-----GAAACAGCUAGGC- -5'
26209 5' -52.2 NC_005342.2 + 13046 0.66 0.8404
Target:  5'- aUGCCcgGCG-CGAACgucgaUUUGUCGAUgCGc -3'
miRNA:   3'- aACGG--CGCaGCUUG-----AAACAGCUAgGC- -5'
26209 5' -52.2 NC_005342.2 + 11494 0.66 0.821832
Target:  5'- -cGCUGCGaaggcgucaugUCGAGCUUgaUGUCGAagcCCGc -3'
miRNA:   3'- aaCGGCGC-----------AGCUUGAA--ACAGCUa--GGC- -5'
26209 5' -52.2 NC_005342.2 + 15288 0.68 0.73997
Target:  5'- cUUGCCGUcgagcaggucGUCGAugaAC-UUGUCGAUCuCGg -3'
miRNA:   3'- -AACGGCG----------CAGCU---UGaAACAGCUAG-GC- -5'
26209 5' -52.2 NC_005342.2 + 15605 0.68 0.729083
Target:  5'- gUGCCGUuggCGAccucgaucacgGCUUUGUCGAagCCGa -3'
miRNA:   3'- aACGGCGca-GCU-----------UGAAACAGCUa-GGC- -5'
26209 5' -52.2 NC_005342.2 + 10745 0.69 0.684625
Target:  5'- --aUCGCGUCGAACagcGUCGAaCCGa -3'
miRNA:   3'- aacGGCGCAGCUUGaaaCAGCUaGGC- -5'
26209 5' -52.2 NC_005342.2 + 32101 0.74 0.393901
Target:  5'- -cGCCGCGUCGGGgUUcucggUGUCGGcCCGc -3'
miRNA:   3'- aaCGGCGCAGCUUgAA-----ACAGCUaGGC- -5'
26209 5' -52.2 NC_005342.2 + 24950 0.75 0.340265
Target:  5'- -cGCCGCaGUCGAGCUUcgaGUUGAUCgCGa -3'
miRNA:   3'- aaCGGCG-CAGCUUGAAa--CAGCUAG-GC- -5'
26209 5' -52.2 NC_005342.2 + 13827 0.75 0.340265
Target:  5'- -cGCCGCGUCGAGCgcaUUGagCGcgCCGc -3'
miRNA:   3'- aaCGGCGCAGCUUGa--AACa-GCuaGGC- -5'
26209 5' -52.2 NC_005342.2 + 35566 0.75 0.340265
Target:  5'- -cGCCGCGUUGAugUcagUG-CGAUCCa -3'
miRNA:   3'- aaCGGCGCAGCUugAa--ACaGCUAGGc -5'
26209 5' -52.2 NC_005342.2 + 38149 1.06 0.002687
Target:  5'- cUUGCCGCGUCGAACUUUGUCGAUCCGu -3'
miRNA:   3'- -AACGGCGCAGCUUGAAACAGCUAGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.