miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2621 3' -63.1 NC_001491.2 + 39442 0.67 0.539883
Target:  5'- aGCCgcgggcCCCAGUcgccuGGGUGcUGGCC-CCCGc -3'
miRNA:   3'- -CGGa-----GGGUCA-----CCCGC-ACCGGaGGGUc -5'
2621 3' -63.1 NC_001491.2 + 126877 0.68 0.484013
Target:  5'- cGCCUUUgGGUacGGCGUGGCCgcUCCCc- -3'
miRNA:   3'- -CGGAGGgUCAc-CCGCACCGG--AGGGuc -5'
2621 3' -63.1 NC_001491.2 + 115676 0.7 0.361464
Target:  5'- gGCUUCCacgacuuguGUGGGUGUugugcuggccuggauGGUCUCCCAGg -3'
miRNA:   3'- -CGGAGGgu-------CACCCGCA---------------CCGGAGGGUC- -5'
2621 3' -63.1 NC_001491.2 + 32102 0.71 0.314977
Target:  5'- gGCCUCCCc--GGGCGgagGGUC-CCCGGc -3'
miRNA:   3'- -CGGAGGGucaCCCGCa--CCGGaGGGUC- -5'
2621 3' -63.1 NC_001491.2 + 33632 0.71 0.308135
Target:  5'- cGCCUCCgCGGcgGGGCGUccGCCgucCCCGGa -3'
miRNA:   3'- -CGGAGG-GUCa-CCCGCAc-CGGa--GGGUC- -5'
2621 3' -63.1 NC_001491.2 + 4681 0.73 0.224116
Target:  5'- aGCCaUCCCcGcGGGCGguucgGGCCUCuCCAGc -3'
miRNA:   3'- -CGG-AGGGuCaCCCGCa----CCGGAG-GGUC- -5'
2621 3' -63.1 NC_001491.2 + 6322 0.74 0.21384
Target:  5'- uGCCUucccCCUAGUGGGaGUGGCCagCCCAc -3'
miRNA:   3'- -CGGA----GGGUCACCCgCACCGGa-GGGUc -5'
2621 3' -63.1 NC_001491.2 + 149949 0.94 0.007526
Target:  5'- gGCCUCCCAGUGGGCGUGGCCuaauaaaaaaaUCCCAu -3'
miRNA:   3'- -CGGAGGGUCACCCGCACCGG-----------AGGGUc -5'
2621 3' -63.1 NC_001491.2 + 149915 1.09 0.00067
Target:  5'- gGCCUCCCAGUGGGCGUGGCCUCCCAGu -3'
miRNA:   3'- -CGGAGGGUCACCCGCACCGGAGGGUC- -5'
2621 3' -63.1 NC_001491.2 + 149881 1.09 0.00067
Target:  5'- gGCCUCCCAGUGGGCGUGGCCUCCCAGu -3'
miRNA:   3'- -CGGAGGGUCACCCGCACCGGAGGGUC- -5'
2621 3' -63.1 NC_001491.2 + 149847 1.09 0.00067
Target:  5'- gGCCUCCCAGUGGGCGUGGCCUCCCAGu -3'
miRNA:   3'- -CGGAGGGUCACCCGCACCGGAGGGUC- -5'
2621 3' -63.1 NC_001491.2 + 149813 1.09 0.00067
Target:  5'- gGCCUCCCAGUGGGCGUGGCCUCCCAGu -3'
miRNA:   3'- -CGGAGGGUCACCCGCACCGGAGGGUC- -5'
2621 3' -63.1 NC_001491.2 + 149779 1.09 0.00067
Target:  5'- gGCCUCCCAGUGGGCGUGGCCUCCCAGu -3'
miRNA:   3'- -CGGAGGGUCACCCGCACCGGAGGGUC- -5'
2621 3' -63.1 NC_001491.2 + 149745 1.09 0.00067
Target:  5'- gGCCUCCCAGUGGGCGUGGCCUCCCAGu -3'
miRNA:   3'- -CGGAGGGUCACCCGCACCGGAGGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.