miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2621 5' -51.5 NC_001491.2 + 7205 0.66 0.982505
Target:  5'- cUCCCAauauucaaaugacauGaggGGGCGUGGCUUGAg----- -3'
miRNA:   3'- -AGGGU---------------Ca--CCCGCACCGGAUUauuuuu -5'
2621 5' -51.5 NC_001491.2 + 147392 0.66 0.979418
Target:  5'- aCCCAGUGGGCaauaaGcGCCUcgggcGUGAAGAc -3'
miRNA:   3'- aGGGUCACCCGca---C-CGGAu----UAUUUUU- -5'
2621 5' -51.5 NC_001491.2 + 18 0.66 0.976977
Target:  5'- aCCCccgcauuugaauAGggGGGCGUGGUCUAAgggGGGGGg -3'
miRNA:   3'- aGGG------------UCa-CCCGCACCGGAUUa--UUUUU- -5'
2621 5' -51.5 NC_001491.2 + 88525 0.66 0.97433
Target:  5'- uUCCCAGcgggugGGGgGUGGCg-AGUAAGu- -3'
miRNA:   3'- -AGGGUCa-----CCCgCACCGgaUUAUUUuu -5'
2621 5' -51.5 NC_001491.2 + 23790 0.7 0.898976
Target:  5'- aUUCCGaugccGUGGGCGUGuGCCU-AUAAAGc -3'
miRNA:   3'- -AGGGU-----CACCCGCAC-CGGAuUAUUUUu -5'
2621 5' -51.5 NC_001491.2 + 43086 0.7 0.884905
Target:  5'- gCUUAGUGGGUggggGUGGCC-AGUAGAGGu -3'
miRNA:   3'- aGGGUCACCCG----CACCGGaUUAUUUUU- -5'
2621 5' -51.5 NC_001491.2 + 6330 0.71 0.861954
Target:  5'- cCCUAGUGGGaGUGGCCa-------- -3'
miRNA:   3'- aGGGUCACCCgCACCGGauuauuuuu -5'
2621 5' -51.5 NC_001491.2 + 85 0.71 0.853836
Target:  5'- gUCaCCGGaagGGGCGUGGCCg---GAAGc -3'
miRNA:   3'- -AG-GGUCa--CCCGCACCGGauuaUUUUu -5'
2621 5' -51.5 NC_001491.2 + 149918 0.93 0.069825
Target:  5'- cUCCCAGUGGGCGUGGCCUcccAGUGGGc- -3'
miRNA:   3'- -AGGGUCACCCGCACCGGA---UUAUUUuu -5'
2621 5' -51.5 NC_001491.2 + 149884 0.93 0.069825
Target:  5'- cUCCCAGUGGGCGUGGCCUcccAGUGGGc- -3'
miRNA:   3'- -AGGGUCACCCGCACCGGA---UUAUUUuu -5'
2621 5' -51.5 NC_001491.2 + 149850 0.93 0.069825
Target:  5'- cUCCCAGUGGGCGUGGCCUcccAGUGGGc- -3'
miRNA:   3'- -AGGGUCACCCGCACCGGA---UUAUUUuu -5'
2621 5' -51.5 NC_001491.2 + 149816 0.93 0.069825
Target:  5'- cUCCCAGUGGGCGUGGCCUcccAGUGGGc- -3'
miRNA:   3'- -AGGGUCACCCGCACCGGA---UUAUUUuu -5'
2621 5' -51.5 NC_001491.2 + 149782 0.93 0.069825
Target:  5'- cUCCCAGUGGGCGUGGCCUcccAGUGGGc- -3'
miRNA:   3'- -AGGGUCACCCGCACCGGA---UUAUUUuu -5'
2621 5' -51.5 NC_001491.2 + 149748 0.93 0.069825
Target:  5'- cUCCCAGUGGGCGUGGCCUcccAGUGGGc- -3'
miRNA:   3'- -AGGGUCACCCGCACCGGA---UUAUUUuu -5'
2621 5' -51.5 NC_001491.2 + 149952 1.07 0.008018
Target:  5'- cUCCCAGUGGGCGUGGCCUAAUAAAAAa -3'
miRNA:   3'- -AGGGUCACCCGCACCGGAUUAUUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.