miRNA display CGI


Results 1 - 20 of 220 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26210 5' -63.3 NC_005342.2 + 44762 0.66 0.314213
Target:  5'- gGCGUCAuCgggGCGGgC-GGCGCGCCGg -3'
miRNA:   3'- -CGCGGUcGa--UGUCgGcCCGCGCGGCg -5'
26210 5' -63.3 NC_005342.2 + 20368 0.66 0.314213
Target:  5'- aCGCCgucgaaaaugaAGUUAaGGCCGuGGCcgcaguggccGCGCCGCu -3'
miRNA:   3'- cGCGG-----------UCGAUgUCGGC-CCG----------CGCGGCG- -5'
26210 5' -63.3 NC_005342.2 + 2408 0.66 0.314213
Target:  5'- cGUGCCuuGgUACGGCgCGGcgaacacuuGCGCGCCa- -3'
miRNA:   3'- -CGCGGu-CgAUGUCG-GCC---------CGCGCGGcg -5'
26210 5' -63.3 NC_005342.2 + 11882 0.66 0.314213
Target:  5'- cGCGgcCCGGCaugcGCAGC--GGCGCGCgCGCc -3'
miRNA:   3'- -CGC--GGUCGa---UGUCGgcCCGCGCG-GCG- -5'
26210 5' -63.3 NC_005342.2 + 29136 0.66 0.314213
Target:  5'- cGCGCgGGCUucgauaGCAGCac-GCGCccugcgGCCGCg -3'
miRNA:   3'- -CGCGgUCGA------UGUCGgccCGCG------CGGCG- -5'
26210 5' -63.3 NC_005342.2 + 8606 0.66 0.314213
Target:  5'- cGCGuCCGGCaGCAGUCGGcCGCuaggauguucauGCaCGCg -3'
miRNA:   3'- -CGC-GGUCGaUGUCGGCCcGCG------------CG-GCG- -5'
26210 5' -63.3 NC_005342.2 + 17489 0.66 0.307583
Target:  5'- uGCGCUcgaccgcaccgaucuGCUGCAGCCGGuCGCaCUGUc -3'
miRNA:   3'- -CGCGGu--------------CGAUGUCGGCCcGCGcGGCG- -5'
26210 5' -63.3 NC_005342.2 + 45596 0.66 0.306853
Target:  5'- cCGCCGGC-GCcGUCauGGGCuaCGCCGCg -3'
miRNA:   3'- cGCGGUCGaUGuCGG--CCCGc-GCGGCG- -5'
26210 5' -63.3 NC_005342.2 + 8273 0.66 0.306853
Target:  5'- aCGCCAGCaccucauUAGUCGGGCacucuucgaGCGCUuGCu -3'
miRNA:   3'- cGCGGUCGau-----GUCGGCCCG---------CGCGG-CG- -5'
26210 5' -63.3 NC_005342.2 + 13522 0.66 0.306853
Target:  5'- cCGCCGGCggccaGGCCGGaUGUGUCGg -3'
miRNA:   3'- cGCGGUCGaug--UCGGCCcGCGCGGCg -5'
26210 5' -63.3 NC_005342.2 + 21893 0.66 0.306124
Target:  5'- aGCGCCGccGCUGCGGCgccacuggcaaauCcGGCGCaCCGUc -3'
miRNA:   3'- -CGCGGU--CGAUGUCG-------------GcCCGCGcGGCG- -5'
26210 5' -63.3 NC_005342.2 + 45211 0.66 0.302501
Target:  5'- -gGUCAGCgagAUcgucuacaacuggcgGGCgGGGCGCcCCGCa -3'
miRNA:   3'- cgCGGUCGa--UG---------------UCGgCCCGCGcGGCG- -5'
26210 5' -63.3 NC_005342.2 + 20992 0.66 0.299626
Target:  5'- uGCGUUucgAGCgcgugGCAGCCgucacGGGCGacgaagugGCCGCg -3'
miRNA:   3'- -CGCGG---UCGa----UGUCGG-----CCCGCg-------CGGCG- -5'
26210 5' -63.3 NC_005342.2 + 38031 0.66 0.299626
Target:  5'- gGCGaCCGGCgaaaUGC-GCCucgaGGGUGUGCCGa -3'
miRNA:   3'- -CGC-GGUCG----AUGuCGG----CCCGCGCGGCg -5'
26210 5' -63.3 NC_005342.2 + 38116 0.66 0.299626
Target:  5'- aCGCCGGCcACGGUCaagacGGCGaucgagacgcuUGCCGCg -3'
miRNA:   3'- cGCGGUCGaUGUCGGc----CCGC-----------GCGGCG- -5'
26210 5' -63.3 NC_005342.2 + 32465 0.66 0.299626
Target:  5'- cGCGCaggucGCUGCcGCCGGccauaaGCGCgGCa -3'
miRNA:   3'- -CGCGgu---CGAUGuCGGCCcg----CGCGgCG- -5'
26210 5' -63.3 NC_005342.2 + 20528 0.66 0.299626
Target:  5'- gGCGCCuGGUcgACAGCCGu---CGCCGCg -3'
miRNA:   3'- -CGCGG-UCGa-UGUCGGCccgcGCGGCG- -5'
26210 5' -63.3 NC_005342.2 + 22660 0.66 0.299626
Target:  5'- uCGCCGGCguCGGcCCGGuuGCGaCGCCGa -3'
miRNA:   3'- cGCGGUCGauGUC-GGCC--CGC-GCGGCg -5'
26210 5' -63.3 NC_005342.2 + 30493 0.66 0.299626
Target:  5'- aGCGUgAGCgcgGCGGCCuu-CGCGuuGCg -3'
miRNA:   3'- -CGCGgUCGa--UGUCGGcccGCGCggCG- -5'
26210 5' -63.3 NC_005342.2 + 32689 0.66 0.299626
Target:  5'- aGCGCCcGgUGCugauGCUGaccGCGcCGCCGCa -3'
miRNA:   3'- -CGCGGuCgAUGu---CGGCc--CGC-GCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.