miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26212 3' -62.9 NC_005342.2 + 30430 0.66 0.327901
Target:  5'- aUGUGCGCgaucgcuucggacagUGCgACCGGCugcagcagaucGGUGCGGUCg -3'
miRNA:   3'- cGCGCGCG---------------ACG-UGGCCG-----------UCGUGCCGG- -5'
26212 3' -62.9 NC_005342.2 + 6773 0.66 0.324838
Target:  5'- aGCGCGCcgaucuucgccuGUcGCAaCGGCGGCAcucCGGCg -3'
miRNA:   3'- -CGCGCG------------CGaCGUgGCCGUCGU---GCCGg -5'
26212 3' -62.9 NC_005342.2 + 38013 0.66 0.324838
Target:  5'- aCGCGCGaccgUGCACgCGGCGaC-CGGCg -3'
miRNA:   3'- cGCGCGCg---ACGUG-GCCGUcGuGCCGg -5'
26212 3' -62.9 NC_005342.2 + 44783 0.66 0.324838
Target:  5'- cGCGCG-GCcGCGCCcgGGCaAGaaaACGGCg -3'
miRNA:   3'- -CGCGCgCGaCGUGG--CCG-UCg--UGCCGg -5'
26212 3' -62.9 NC_005342.2 + 27848 0.66 0.324838
Target:  5'- aGCaCGuCGCUGagcuuCACCGGCccugcguucgAGUACGGCg -3'
miRNA:   3'- -CGcGC-GCGAC-----GUGGCCG----------UCGUGCCGg -5'
26212 3' -62.9 NC_005342.2 + 43775 0.66 0.324838
Target:  5'- aCGCGCaGCUGCAaauCCaGGCgcagaAGCACacGCCg -3'
miRNA:   3'- cGCGCG-CGACGU---GG-CCG-----UCGUGc-CGG- -5'
26212 3' -62.9 NC_005342.2 + 47780 0.66 0.324838
Target:  5'- gGCGCaaGCcaaGCCGGCGggcGCACGGgCa -3'
miRNA:   3'- -CGCGcgCGacgUGGCCGU---CGUGCCgG- -5'
26212 3' -62.9 NC_005342.2 + 29769 0.66 0.324838
Target:  5'- cCGCGCGCacgacgagcGCAucacCCGGCAcGC-CGGCa -3'
miRNA:   3'- cGCGCGCGa--------CGU----GGCCGU-CGuGCCGg -5'
26212 3' -62.9 NC_005342.2 + 41373 0.66 0.324838
Target:  5'- cUGCGacuGCgGCGCUgGGCGGCGC-GCCg -3'
miRNA:   3'- cGCGCg--CGaCGUGG-CCGUCGUGcCGG- -5'
26212 3' -62.9 NC_005342.2 + 2132 0.66 0.317276
Target:  5'- -aGCGCGCaccGCGCuCGGCcaaGGuUGCGGUCa -3'
miRNA:   3'- cgCGCGCGa--CGUG-GCCG---UC-GUGCCGG- -5'
26212 3' -62.9 NC_005342.2 + 9354 0.66 0.317276
Target:  5'- aGCGCGaaGCgGCG-CGGguGCGCGGaCg -3'
miRNA:   3'- -CGCGCg-CGaCGUgGCCguCGUGCCgG- -5'
26212 3' -62.9 NC_005342.2 + 18901 0.66 0.317276
Target:  5'- cGCGCG-GCUGguaCACCcucuGGCuGCAgGGCg -3'
miRNA:   3'- -CGCGCgCGAC---GUGG----CCGuCGUgCCGg -5'
26212 3' -62.9 NC_005342.2 + 29471 0.66 0.317276
Target:  5'- -gGCGUGCcgGCAgCGGCgGGUAC-GCCu -3'
miRNA:   3'- cgCGCGCGa-CGUgGCCG-UCGUGcCGG- -5'
26212 3' -62.9 NC_005342.2 + 47773 0.66 0.317276
Target:  5'- cCGCGCGCU---CUGGCGuGUugGGCg -3'
miRNA:   3'- cGCGCGCGAcguGGCCGU-CGugCCGg -5'
26212 3' -62.9 NC_005342.2 + 47150 0.66 0.317276
Target:  5'- aGCGaCGCGCagGCgACC-GCAGCuACGucGCCg -3'
miRNA:   3'- -CGC-GCGCGa-CG-UGGcCGUCG-UGC--CGG- -5'
26212 3' -62.9 NC_005342.2 + 2565 0.66 0.317276
Target:  5'- uCGCGCGCccgcucgguaggUGCAUgcGCAGCGCGcGCg -3'
miRNA:   3'- cGCGCGCG------------ACGUGgcCGUCGUGC-CGg -5'
26212 3' -62.9 NC_005342.2 + 21858 0.66 0.309847
Target:  5'- gGCGCGCGCUacaaGCUGGUucgcuGCGCauaGCCc -3'
miRNA:   3'- -CGCGCGCGAcg--UGGCCGu----CGUGc--CGG- -5'
26212 3' -62.9 NC_005342.2 + 898 0.66 0.309847
Target:  5'- cGUGCgGCGuUUGCGCUuuGGCGGCuCGGgCu -3'
miRNA:   3'- -CGCG-CGC-GACGUGG--CCGUCGuGCCgG- -5'
26212 3' -62.9 NC_005342.2 + 14834 0.66 0.309847
Target:  5'- gGCGCGCagucGCcGCGCCGcaGGCAUcGCCg -3'
miRNA:   3'- -CGCGCG----CGaCGUGGCcgUCGUGcCGG- -5'
26212 3' -62.9 NC_005342.2 + 32582 0.66 0.309847
Target:  5'- cGCG-GCGUuuguuucgcuugUGCACCGGCcacguuacaAGCAuuCGGCg -3'
miRNA:   3'- -CGCgCGCG------------ACGUGGCCG---------UCGU--GCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.