miRNA display CGI


Results 1 - 20 of 270 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26212 3' -62.9 NC_005342.2 + 109 0.68 0.242202
Target:  5'- cGCGCGCccgguugccgccuGCgccucgucgGCACCGaGCAGCACGa-- -3'
miRNA:   3'- -CGCGCG-------------CGa--------CGUGGC-CGUCGUGCcgg -5'
26212 3' -62.9 NC_005342.2 + 171 0.66 0.302551
Target:  5'- cCGUGCGCc-CGCCGGCuuGGCuuGcGCCa -3'
miRNA:   3'- cGCGCGCGacGUGGCCG--UCGugC-CGG- -5'
26212 3' -62.9 NC_005342.2 + 199 0.7 0.160995
Target:  5'- cGCGCGgGCaagccagaacGCGCCGauGUAGCACaGCCg -3'
miRNA:   3'- -CGCGCgCGa---------CGUGGC--CGUCGUGcCGG- -5'
26212 3' -62.9 NC_005342.2 + 401 0.68 0.242202
Target:  5'- gGCgGCGCGCUGCacgaucaGCCugcgaucugcaGGUauucgAGCGCGGCg -3'
miRNA:   3'- -CG-CGCGCGACG-------UGG-----------CCG-----UCGUGCCGg -5'
26212 3' -62.9 NC_005342.2 + 688 0.66 0.302551
Target:  5'- gGCGaGUGCauucaaUGUACUGGUcGCGcCGGCCg -3'
miRNA:   3'- -CGCgCGCG------ACGUGGCCGuCGU-GCCGG- -5'
26212 3' -62.9 NC_005342.2 + 851 0.69 0.193213
Target:  5'- -gGCGCGCUGg--CGGCAGCuGCaGCCu -3'
miRNA:   3'- cgCGCGCGACgugGCCGUCG-UGcCGG- -5'
26212 3' -62.9 NC_005342.2 + 898 0.66 0.309847
Target:  5'- cGUGCgGCGuUUGCGCUuuGGCGGCuCGGgCu -3'
miRNA:   3'- -CGCG-CGC-GACGUGG--CCGUCGuGCCgG- -5'
26212 3' -62.9 NC_005342.2 + 909 0.73 0.104585
Target:  5'- aGCGUGCGCcgcgcuaugcguuUGCauggaaugcaauGCCGGCAGCuucCGGCg -3'
miRNA:   3'- -CGCGCGCG-------------ACG------------UGGCCGUCGu--GCCGg -5'
26212 3' -62.9 NC_005342.2 + 1076 0.69 0.178764
Target:  5'- uCG-GCGCacGCugCGGCGGCGC-GCCa -3'
miRNA:   3'- cGCgCGCGa-CGugGCCGUCGUGcCGG- -5'
26212 3' -62.9 NC_005342.2 + 1118 0.67 0.266094
Target:  5'- cGCGCGaCGUUGCACugcauauccgaucgCGGCGGCuugcuucgGGUCu -3'
miRNA:   3'- -CGCGC-GCGACGUG--------------GCCGUCGug------CCGG- -5'
26212 3' -62.9 NC_005342.2 + 1293 0.68 0.208675
Target:  5'- gGCGCGCGCcGCcUUGGCuGCGCGcgauGCUu -3'
miRNA:   3'- -CGCGCGCGaCGuGGCCGuCGUGC----CGG- -5'
26212 3' -62.9 NC_005342.2 + 1358 0.68 0.236812
Target:  5'- gGCGCuCGCgGCACuCGGUuucuuucgagcGCACGGCg -3'
miRNA:   3'- -CGCGcGCGaCGUG-GCCGu----------CGUGCCGg -5'
26212 3' -62.9 NC_005342.2 + 1455 0.7 0.169671
Target:  5'- -gGCaCGCUuggacGUGCCGaGCAGCGCGGCg -3'
miRNA:   3'- cgCGcGCGA-----CGUGGC-CGUCGUGCCGg -5'
26212 3' -62.9 NC_005342.2 + 1850 0.67 0.268059
Target:  5'- -gGCGCGCcugGC-CCGGauuGGCGgGGUCg -3'
miRNA:   3'- cgCGCGCGa--CGuGGCCg--UCGUgCCGG- -5'
26212 3' -62.9 NC_005342.2 + 1899 0.68 0.219567
Target:  5'- aCGCGUcugcacuaguugGCccGCACCGGCGaCAcCGGCCg -3'
miRNA:   3'- cGCGCG------------CGa-CGUGGCCGUcGU-GCCGG- -5'
26212 3' -62.9 NC_005342.2 + 2132 0.66 0.317276
Target:  5'- -aGCGCGCaccGCGCuCGGCcaaGGuUGCGGUCa -3'
miRNA:   3'- cgCGCGCGa--CGUG-GCCG---UC-GUGCCGG- -5'
26212 3' -62.9 NC_005342.2 + 2245 0.67 0.274694
Target:  5'- aGCGCaGCGCguuCGCCGuCGGCAggucgugcgccgUGGCCg -3'
miRNA:   3'- -CGCG-CGCGac-GUGGCcGUCGU------------GCCGG- -5'
26212 3' -62.9 NC_005342.2 + 2290 0.68 0.23036
Target:  5'- cGCcCGCGUUGaACUGGCGgaacgcgagcaccGUGCGGCCg -3'
miRNA:   3'- -CGcGCGCGACgUGGCCGU-------------CGUGCCGG- -5'
26212 3' -62.9 NC_005342.2 + 2565 0.66 0.317276
Target:  5'- uCGCGCGCccgcucgguaggUGCAUgcGCAGCGCGcGCg -3'
miRNA:   3'- cGCGCGCG------------ACGUGgcCGUCGUGC-CGg -5'
26212 3' -62.9 NC_005342.2 + 2621 0.68 0.219567
Target:  5'- cGCGCuCGCcggcGUAUCGGCGGCGacacCGGCa -3'
miRNA:   3'- -CGCGcGCGa---CGUGGCCGUCGU----GCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.