miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26212 5' -57.1 NC_005342.2 + 14231 0.66 0.583365
Target:  5'- uUCGaGCCGAGCgGCG-GCAc-GCcuUCGAg -3'
miRNA:   3'- -AGC-CGGCUCGaCGCaCGUuaCG--AGCU- -5'
26212 5' -57.1 NC_005342.2 + 33310 0.66 0.568063
Target:  5'- cUCGGCCGAcaaGCUGCGcGaAAUGCgccgcaacaucagCGAa -3'
miRNA:   3'- -AGCCGGCU---CGACGCaCgUUACGa------------GCU- -5'
26212 5' -57.1 NC_005342.2 + 5007 0.66 0.561535
Target:  5'- gCGGCgCGGGCaUGCGaacGCAcgGCaCGAg -3'
miRNA:   3'- aGCCG-GCUCG-ACGCa--CGUuaCGaGCU- -5'
26212 5' -57.1 NC_005342.2 + 9983 0.66 0.550703
Target:  5'- gUCGGCCGu-CUGCGcGacGUGCUUGAu -3'
miRNA:   3'- -AGCCGGCucGACGCaCguUACGAGCU- -5'
26212 5' -57.1 NC_005342.2 + 35859 0.66 0.539935
Target:  5'- aCGG-CGAGCU-CGUGCc--GCUCGGu -3'
miRNA:   3'- aGCCgGCUCGAcGCACGuuaCGAGCU- -5'
26212 5' -57.1 NC_005342.2 + 31469 0.66 0.539935
Target:  5'- gCGGcCCGAGacagagaGUGUGgAAUGUUCGAc -3'
miRNA:   3'- aGCC-GGCUCga-----CGCACgUUACGAGCU- -5'
26212 5' -57.1 NC_005342.2 + 44808 0.66 0.539935
Target:  5'- aCGGCgGA-CUGCGagGCGAUaCUCGAc -3'
miRNA:   3'- aGCCGgCUcGACGCa-CGUUAcGAGCU- -5'
26212 5' -57.1 NC_005342.2 + 13871 0.66 0.539935
Target:  5'- cCGGCaCGGGCUGCGcgGCGGccGUcgCGAu -3'
miRNA:   3'- aGCCG-GCUCGACGCa-CGUUa-CGa-GCU- -5'
26212 5' -57.1 NC_005342.2 + 6811 0.66 0.536718
Target:  5'- cCGcGUCGAGCaGCGccuguucgaucaugUGCGcGUGCUCGAu -3'
miRNA:   3'- aGC-CGGCUCGaCGC--------------ACGU-UACGAGCU- -5'
26212 5' -57.1 NC_005342.2 + 21413 0.66 0.529239
Target:  5'- cCGGCgCGGGCUcCGUGCA--GUUCGc -3'
miRNA:   3'- aGCCG-GCUCGAcGCACGUuaCGAGCu -5'
26212 5' -57.1 NC_005342.2 + 9051 0.66 0.529239
Target:  5'- -gGGCCGuGCUGCcgGUGCAGcGCgCGc -3'
miRNA:   3'- agCCGGCuCGACG--CACGUUaCGaGCu -5'
26212 5' -57.1 NC_005342.2 + 2685 0.67 0.518622
Target:  5'- -aGGCCGAGCU-CGUcgGCGAgguUGUUCGu -3'
miRNA:   3'- agCCGGCUCGAcGCA--CGUU---ACGAGCu -5'
26212 5' -57.1 NC_005342.2 + 18805 0.67 0.50809
Target:  5'- gCGGCCGcagGGC-GCGUGC--UGCuaUCGAa -3'
miRNA:   3'- aGCCGGC---UCGaCGCACGuuACG--AGCU- -5'
26212 5' -57.1 NC_005342.2 + 6419 0.67 0.487308
Target:  5'- gCGGCCGGGCgccGuCGUGCcGUcgggcaGCUUGAc -3'
miRNA:   3'- aGCCGGCUCGa--C-GCACGuUA------CGAGCU- -5'
26212 5' -57.1 NC_005342.2 + 5558 0.67 0.473002
Target:  5'- gUCGGCCG-GCguggagacgaucgGCGcuguUGCGGgcUGCUCGAc -3'
miRNA:   3'- -AGCCGGCuCGa------------CGC----ACGUU--ACGAGCU- -5'
26212 5' -57.1 NC_005342.2 + 10741 0.68 0.456915
Target:  5'- gUGGCCGuGGCcgGCG-GCccauUGCUCGAu -3'
miRNA:   3'- aGCCGGC-UCGa-CGCaCGuu--ACGAGCU- -5'
26212 5' -57.1 NC_005342.2 + 41743 0.68 0.456915
Target:  5'- gCGGCCaacGAGCgggGCGUGCuc-GC-CGAa -3'
miRNA:   3'- aGCCGG---CUCGa--CGCACGuuaCGaGCU- -5'
26212 5' -57.1 NC_005342.2 + 30829 0.68 0.437228
Target:  5'- gCGGCgCGAGCUGC-UGCuc-GCgcgCGAg -3'
miRNA:   3'- aGCCG-GCUCGACGcACGuuaCGa--GCU- -5'
26212 5' -57.1 NC_005342.2 + 19185 0.68 0.437228
Target:  5'- gUCGGCgCGAucGUggGCGgcGCAGUGCUCGc -3'
miRNA:   3'- -AGCCG-GCU--CGa-CGCa-CGUUACGAGCu -5'
26212 5' -57.1 NC_005342.2 + 19368 0.69 0.408637
Target:  5'- gCGGCaCGAGCgcucgaGCGUGCAG-GUUaCGAa -3'
miRNA:   3'- aGCCG-GCUCGa-----CGCACGUUaCGA-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.